Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1677 ATGGTTACCACCACAGTTGATTCTTCTTCTAACCATCACTCGCCCACTAGTGCCGCTGCTAGCCCTAAGTTCCCGCGAAAAAACCTACCCTCTCCCTGGGCTCAGGTCGTTCGCGGCCCAGACACCGAGCCCAACCGTCAATCGCCGCCGTCTTCTTCTTCCTCTTCATCATCCCTTGATTCCGTTAATTCTAACGGTGCCGTCATAGATATCCCTACGAAACCTGCTTGGAAGAGACCCTCCAATGTCAACGCCGAGGTTGGTCCCGTAATGGGTGCTGTCTCATGGCCCCCTTTATCTGAATCCACCAAGCCTTCGGCTAAATCGACACCTGATTCTACTTCTCCCAAGACTCCCACTGATGATGGGTCACTCTCCACTCCTCAGGTGCCTGTTATTTCAGACTCCTCTCAGAAACAAGCTAGTAGTAACGTGAAACCTAATCCTGTGATGAACTATAATAGACAAAGATCGATGAAGCGGGGAGGTGCCAATGGCAATGGCGTTGGGCCTGGTCCTGCACAGAACATCTACTCCAACCCTTCCCCAAATCTTCCACCGCCGTCACCACCCTTTCCTGTGCTTCAGATCCCGCCAAGTACGTTTGCGAATGGGGTACCTGTGGTTCCAGTTCCTTCTCCGAGAGATCCTTACAGGAATAACTGGGATGCAAGACCTCCGGTTGGGGGTTTTACGCCACCCATGAATGGACAACGGAGTCCCTCTCGCAGGGGTAATGTTGGGCATCATCCACGTGGGGATGGTACCTATCATAACAGTTATGGCAACAGGCGTGATCAGGATCGTGGAGGTTATACAAATTCTCGAGATGCTCATGTACATCAGCAGAGGATGCCACCAAGGGGATTAATGAGGCCTCCACCACCTAATCCTGCTTCGTTTATGGGGCCTCAGCCTTTGCGACCCTTTGCAAATCCTGCTGGGTTTCCTGAATTCTATTATTTTCCAACACTACAGTTTGAACCCTTTGGGGGCATGCCATTCTTCACACATGCACCTCCTCCTGCAATGTTCTTCCCTGTTGCAGAAACTCCCCTGACCAATACGATTGCCAACCAAATTGACTATTACTTTAGTGATGTTAATTTAGTGAAAGATGAGTTTTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCAATTTCTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAATTGATATTGGATTCATTGAGAACTTCCACTGTTGTGGAAGTGCAGGGTGACAAGTTGAGGAGGCGTAATGAGTGGATGAAGTGGCTGCCCTCTACTCAGCTTCGGGCCAATTCTGATTCAATGTCTCCTGGCGAATCAAGTGGCAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGCACGAAGAAACTACAGATAAAGTTAATTCTGAACCTACCACCAACGGTGATGCTGCAGGAGAGTCCTCCACTCAGTCTAAACTCCCCAATGGTGATGCTACAGGGAGCAGGAGTTAA 1512 0.4894 MVTTTVDSSSNHHSPTSAAASPKFPRKNLPSPWAQVVRGPDTEPNRQSPPSSSSSSSSLDSVNSNGAVIDIPTKPAWKRPSNVNAEVGPVMGAVSWPPLSESTKPSAKSTPDSTSPKTPTDDGSLSTPQVPVISDSSQKQASSNVKPNPVMNYNRQRSMKRGGANGNGVGPGPAQNIYSNPSPNLPPPSPPFPVLQIPPSTFANGVPVVPVPSPRDPYRNNWDARPPVGGFTPPMNGQRSPSRRGNVGHHPRGDGTYHNSYGNRRDQDRGGYTNSRDAHVHQQRMPPRGLMRPPPPNPASFMGPQPLRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFPVAETPLTNTIANQIDYYFSDVNLVKDEFLRSNMDEQGWVPISLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRRNEWMKWLPSTQLRANSDSMSPGESSGNNLAADFEKITVHEETTDKVNSEPTTNGDAAGESSTQSKLPNGDATGSRS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1677 503 Gene3D - 347 436 IPR036388 -
Apr5g1677 503 MobiDBLite consensus disorder prediction 99 161 - -
Apr5g1677 503 ProSiteProfiles La-type HTH domain profile. 347 436 IPR006630 -
Apr5g1677 503 Pfam La domain 357 412 IPR006630 -
Apr5g1677 503 PANTHER LUPUS LA PROTEIN-RELATED 9 492 IPR045180 -
Apr5g1677 503 SUPERFAMILY "Winged helix" DNA-binding domain 344 435 IPR036390 -
Apr5g1677 503 MobiDBLite consensus disorder prediction 440 458 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 41 68 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 474 503 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 1 18 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 259 275 - -
Apr5g1677 503 SMART la 351 429 IPR006630 -
Apr5g1677 503 MobiDBLite consensus disorder prediction 180 197 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 440 503 - -
Apr5g1677 503 MobiDBLite consensus disorder prediction 1 292 - -
Apr5g1677 503 CDD LAM 357 427 - -
Apr5g1677 503 PANTHER LA-RELATED PROTEIN 1B 9 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1677 Apr-Chr5 20331921 20335823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1677 K18757 - gmx:100775279 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1677 5 20331921 20335823 Apr5g1677 5 20331921 20335823 ECH
Apr9g0656 9 10683648 10688262 Apr5g1677 5 20331921 20335823 PCT