Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1663 ATGACTCTGGAAGATTTCTTTACCTTGACCGAGATGAAAGATGGGCTCATCGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTAATGCAGAACGAGAAAGATTGTGAGGTTAAAAATGCTGGTGATGCAACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTATTCAGTTAGATGGACTTTGCTTCATTAATATGTGGTTAAAGGATGCTCAAAATTTGGGGGTTGATTCAAATGACAGTTTTATTGAAGAATCGATCACTGCAATGCTACGAGCAGTTGAAAAGCTGCATCTAGACAGTGAGAAGTCGATTTCATCTGGAATTCGCATCACTGTCAGCAATCTTCTTGACCATCATAGTGCTAGGGTTCAGGATAGAGCCAGAGTGTTATTTGACAGCTGGAAGGGAGGTGGAAATGGTGATACTGATTCTCATGATGTGGAGCTTGCTAAAGTCGACAATGCAAGTGGCAAAATTGGCAGGGAGGAAGGCCATCCATCTGCTGTGAATGAAGCTGGCAATGATAATGGTCATTTATCAGGACTAATTGGAAACGATAAATCACTATTGAGAAGCTCAGATAATTTCCCGATACAGAGTTCTGATAATGTGCTCCAGTCATCTGCCTGTGTGGAGTCTGAAGACATCAAAGAGGGATCCACAAACCATGTTCTTTCCTCTGCTCAAGTTGTTGCTCCCATACACGAAGGATTTCCTTTATGCAGTGCAGGTGAGACCACTTCAGTACGAACCTGTAACTTTCCTATTCCAAATGATGGACAGCCGGATGCAGTACAGTTAAGTGACATGGACAAAAAGGAGAAGCAGGAGTTAAATGATAATGGCGCTCCAGAAAATTCAGGAGCACCATCTGTGTCATCTATGCTAGAGCCTGAGCCTGCTTCCATCGGTGCTAGCGTAATAAAGGCACCAGAATATGTGAAACAACAAGCTTTAGAGCAAAATGTTGGAAACAATGAGGATGATGTTTGTCATAAAATAACTACTACTTGTAGTTTGAGGACACCTGCATCTGATGGGATTGGGGCTGCTGATGATATCAGAGCTGTAACTAGCATTACACAACTTTGCAAAGCTGCAGAAAATGATGACAACTGTTGTCCTAATGCTTTGCAGATCACAGCAGTCAGTGACAGTAACTTGGAAAAGAGTGAGGTGTTAGCCATGTCTGTATCTGAAACAGAATATGTCAGAGCATCAAAGGAAGGCAAGGAGTGGGTTTATAATGATGGTGAGGATACATCAAAAGGTTCTGATTCTAGTAAACCTGTAAAAGAAGATTTTAGAGGCCCTAACATAATTGACAAGAGAGTTTCTGATAATGAACTTGACTGTGGCATTGTGGATGCTTTAGAAGTTGCTCACAAAGTTAGGAGAGAAGTCTGCAGCTCCTCAGAAAAAATCTCCGAAGGTGGAATCAGGCAACCAGGCAGCCCAGATTCTGTAAGAAAAGAGGAAGAGCTCACTCCTGTTCCACCCAAGGAGGTTTCCTCCAGACAAAGCAACTCTACTGGAGCATGTTTTGAGGACGGGCATGAGAGTATGTCAGACAATACCAAGGCTGAGCCTGAATGCAGGCCTGATGTGAAGTCCATGCAGGTGACTGAAGCAGCTCAAGATTCAGGAGATAACTCAGAGAAACGTCTCTGCGCCTTTGATCTCAATGAAATTGGTTCTGATGATGATATGGATGCTTCTGTAAATACTACATCTACTCCAATACCTGTTGTCTCTGCTTCAATGCCTACACCAACTCTAGGGTTGCTTGGGGTCCCTGTGCAGTTCGAGGGGACGCTTGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGACCTGCATCACCTCGTAAAAATTGGGACAATGAGAGAAATCTCCCTGTTGATCAGAACTCTGACACTTCCAAGCAGAGGCAGGATTGGCTTGATATTGATCTAAATGTGGCTGAGGATGAAGAGGATACAATAAAACCTATTGCTGAATCTTCAGGCCTTCCTTCTGGGCAATCATCAGTTGAACTTAGTCCTAAAAGATCAAGCAGGATTGAATTGGATTTGAACAGTATTGGTGATGATGGTGACGCCCAACCTTCAGGTCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCCTCTCCAGCATCATCGTCATCGTCAATGCAACCATCAGTCAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTGTACCAGGGGCCTGGTAAGTCTTCTCATATTATTGATGCACATGGGCATTCTAAATCATCCGATGCCCCTGTTATCTCTATTTTGGGGGCCAAGGTAGAAGTTGGTAAAAAAGAATGTGTTCCTCAAACTGTGTCTTTGCCGAATGGCAAGGCTATTAAAGCTGCAATAGATCTCGCAAATTCTAGACCAGGTGGAGTTATAGGGATAACCCCGGCAGTATCCTTCAATTCATCTGCTTTGGGGTATAATGGAGTTGCATCAGCACCTGCATTGTCTTTTTCGTCAGCCATATACGGGTCAGGTGGCACAATTCCATACACAGTGGACTCAAGAGGAGCTCCAGTTGTTCCTCAAGTTGGCGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCATAATGAATGTGACTGGTACACAACTTGGTTTGAATGGATTTGGACCTTCACGTCCTAACTTTGACCTGAACTCTGGCTTCATGATTGAAGGTGGGAATAGAGATGCATTGGCAGCAAGGCAATTTTTCTTTCCTGGGGGAAGGACTGGGGAGGAGCATGTAAGAACCATGACGCAACCCTCAAGTTCTGGGGTTGGTGGGAAAAGAAAGGAACCAGACAGTGGTTGGGAATCCTACCCATTTAGCTACAAACATCCGCAACCTCCATGGAAGTAG 2970 0.4434 MTLEDFFTLTEMKDGLIAPSRVQELVSVMQNEKDCEVKNAGDATRQWAAVASTIAATENKDCLDLFIQLDGLCFINMWLKDAQNLGVDSNDSFIEESITAMLRAVEKLHLDSEKSISSGIRITVSNLLDHHSARVQDRARVLFDSWKGGGNGDTDSHDVELAKVDNASGKIGREEGHPSAVNEAGNDNGHLSGLIGNDKSLLRSSDNFPIQSSDNVLQSSACVESEDIKEGSTNHVLSSAQVVAPIHEGFPLCSAGETTSVRTCNFPIPNDGQPDAVQLSDMDKKEKQELNDNGAPENSGAPSVSSMLEPEPASIGASVIKAPEYVKQQALEQNVGNNEDDVCHKITTTCSLRTPASDGIGAADDIRAVTSITQLCKAAENDDNCCPNALQITAVSDSNLEKSEVLAMSVSETEYVRASKEGKEWVYNDGEDTSKGSDSSKPVKEDFRGPNIIDKRVSDNELDCGIVDALEVAHKVRREVCSSSEKISEGGIRQPGSPDSVRKEEELTPVPPKEVSSRQSNSTGACFEDGHESMSDNTKAEPECRPDVKSMQVTEAAQDSGDNSEKRLCAFDLNEIGSDDDMDASVNTTSTPIPVVSASMPTPTLGLLGVPVQFEGTLGWKGSAATSAFRPASPRKNWDNERNLPVDQNSDTSKQRQDWLDIDLNVAEDEEDTIKPIAESSGLPSGQSSVELSPKRSSRIELDLNSIGDDGDAQPSGHRMEGQLFLGRNGYWSPSPASSSSSMQPSVRNIDLNDRPCLQTDLVYQGPGKSSHIIDAHGHSKSSDAPVISILGAKVEVGKKECVPQTVSLPNGKAIKAAIDLANSRPGGVIGITPAVSFNSSALGYNGVASAPALSFSSAIYGSGGTIPYTVDSRGAPVVPQVGGSSSTVLSSYSQPPIIMNVTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRDALAARQFFFPGGRTGEEHVRTMTQPSSSGVGGKRKEPDSGWESYPFSYKHPQPPWK* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1663 989 MobiDBLite consensus disorder prediction 624 658 - -
Apr5g1663 989 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 989 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 674 697 - -
Apr5g1663 989 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Apr5g1663 989 MobiDBLite consensus disorder prediction 286 310 - -
Apr5g1663 989 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 989 - -
Apr5g1663 989 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Apr5g1663 989 MobiDBLite consensus disorder prediction 946 989 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 532 548 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 427 447 - -
Apr5g1663 989 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 155 IPR035441 -
Apr5g1663 989 MobiDBLite consensus disorder prediction 170 189 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 680 695 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 513 528 - -
Apr5g1663 989 MobiDBLite consensus disorder prediction 483 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1663 Apr-Chr5 20228826 20235282 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr5g1663 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1663 - - ccaj:109815659 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1663 5 20228826 20235282 Apr5g1663 5 20228826 20235282 ECH