Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1652 ATGCAGCTGAGTCAAAGATATGAGATCAATAATTTAACGTCTAACGCAAGTAATATCGAACTAGCTCCTACTATGAGCACCACAGCTAACTTTCCTCCTCTGGTTCAAACTGAGCCTAGCACAAGAGGAAAGCAAAATGGTACATTAAAAGTTTCAAGAAATGCAAAATCTGGGACTCACAGAGCAAATGGAGACTCCCCTAATTTGACTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTCAGCTTGATCCAGGATGCTAAGGATGGTACCTTGGATCTAAATAAAACCGCTGAGACTTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAATCATATACGGTGGAAGGGATGCGAAGGACATGGGCCACGAGAACTGGAAGACCAAGTTAATAGTCTTAAGGCTGAAGTTGATAGTCTCTATGCTGAGGAATGCCAACTTGACGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTAGAAGAAGGAGAAAACTCTCGAAAGTACCTTTTTTTTACCAAGGAAGATATTCTTAACCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATAAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGACGAGGAATTAGGTTTCCGGCAAAGGCAGTACAAAATGATTGTCAGAAGTGCGACTGGACCAATATATTTGTACCTCTTGAGGTACTTCTCCGCTGTAAACACTCACGCCGGCAAGTTTGAGGATGATAGTGTCAAGCGGGTGAAATTAATAGATCCATCATTGAACAGTGACCACTGCATAAAGGGGGGTGTGGAATTATTAAAAAGCCAAAATGATCAGGAAAATCCTTCTGAGAGTTTCAGTTCGCTGGGGTCACATATGGACGATGACTATTGGTTTCAATCAGATCCTGGTGTGAACCTAACTGAATTGTGGGGTAAAATGTCTTCTAACTAA 1026 0.4035 MQLSQRYEINNLTSNASNIELAPTMSTTANFPPLVQTEPSTRGKQNGTLKVSRNAKSGTHRANGDSPNLTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAETLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCEGHGPRELEDQVNSLKAEVDSLYAEECQLDDCIRKKQELLRNLEEGENSRKYLFFTKEDILNLPCFQNQEIIAIKAPKASFIEVPDPDEELGFRQRQYKMIVRSATGPIYLYLLRYFSAVNTHAGKFEDDSVKRVKLIDPSLNSDHCIKGGVELLKSQNDQENPSESFSSLGSHMDDDYWFQSDPGVNLTELWGKMSSN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1652 341 SUPERFAMILY "Winged helix" DNA-binding domain 76 139 IPR036390 -
Apr5g1652 341 Pfam E2F transcription factor CC-MB domain 157 256 IPR032198 GO:0046983
Apr5g1652 341 PANTHER TRANSCRIPTION FACTOR E2F 2 337 IPR015633 GO:0000978|GO:0006357
Apr5g1652 341 Gene3D - 71 143 IPR036388 -
Apr5g1652 341 SMART E2F_TDP_2 76 141 IPR003316 GO:0005667|GO:0006355
Apr5g1652 341 MobiDBLite consensus disorder prediction 35 67 - -
Apr5g1652 341 CDD E2F_DD 152 256 IPR032198 GO:0046983
Apr5g1652 341 SUPERFAMILY E2F-DP heterodimerization region 152 256 IPR037241 -
Apr5g1652 341 Gene3D - 148 257 - -
Apr5g1652 341 PANTHER TRANSCRIPTION FACTOR E2FC 2 337 - -
Apr5g1652 341 Coils Coil 171 191 - -
Apr5g1652 341 Pfam E2F/DP family winged-helix DNA-binding domain 78 141 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1652 Apr-Chr5 20142074 20144929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1652 56 340 E2F-DP Transcription Factor Family AT1G47870 52.778 1.00e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Apr5g1652 E2F_CC-MB 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1652 K06620 - gmx:100811650 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1652 5 20142074 20144929 Apr5g1652 5 20142074 20144929 ECH