Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1645 ATGAAGCTACCGAGAGAAATGAAGGAACATTACGGGGAGCCGAAGACTTTAAATTGGGAGTTATGGCATGCTTGTGCAGGCCCACTTGTATGCTTGCCTCAGGTGGGGAGTCTTTCTTATTACTTCCCTCAGGGACATTGCGAGCAGGTGGCAGCTTGCACTAGAATGACGGTCACATCGCAGATTCCCAACTATCCCAATCTTCCCTCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAAGAAACTGACGAAATATATGCTCAAATGAGTCTCCAACCGCTAAATTCTGAAAAAGATGTTTTTCCTATATCTGAGTTTGGACTAATGGCAAGTAGCCACCCCACTGAGTTTTTCTGCAAAACATTAACTGCCAGTGACACAAGCACACATGGTGGCTTTTCAGTACCACGCAGGGCAGCAGAAAGGCTCTTTCCTCCATTGGACTACACAATTCAACCACCAAGCCAGGAACTAGTTGTCCGTGATTTGCATGATAATAGCTGGACTTTTCGACATATATACCGAGGTCATCCGAAGAGACACCTTCTCACAACTGGATGGAGTTTGTTCGTGGGATCGAAAAGGCTTAAAGCTGGTGATTCTGTTCTTTTTATCAGGGATGGGAAATCGCAATTGCTAGTTGGTGTTAGGCGTGGTAATCGTCAACAGACATCATTGCCATCATCTGTTCTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCTGCTCATGCTGCTGCTAATCAAACCCTGTTTACTATTTTCTACAATCCAAGAGCATGCTCTTCAGAATTTGTTATTCCAATGGCCAAGTACAGAAAAGCTATATATGAGACCCAGCTCTCAATTGGCTTGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATTTGGATCCTTTAAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTTGAATGGGATGAGCCTGGATGTAGTGATAAACAGAATAGAGTTAGTTCGTGGGACATCGAAACTCCTGAAAGTCTTTTCACCTTTCCCTCTTTCACTTCAAGCCTTAAAAGGCCCTTCCAACCTGGATTGTTGGGAAACGAGTGGAGTGCTTTGTTAAGAAAACCTTTCATGCAGGTTCTTGAAAATGGAACCGTGGAGCTCTCAAACAGCTTTCAGAATCTGTACTCGGAACATATGATGAAAAATCTCTTTAAACCTCAACTTGTTAGCAATACTGGGAACTGTTTATGGATCAGACAAGAAGAATCTTCTGCTAAGAGAGGTCCCTTAGGAGAGGTGAATACCACACTGCCAATGACTTACCAAAAAGTTAACCTTGCAAGTTTAGTGAGCATACCACTAAGCAACATACATTGTCAATCTGAACCAAACCAATCTAGTGCCTTGAACTTGCATAAACCGTTGAAAAGTGATCAACTTGATACATTGCATCCTCTGGCCAAGATTGAAAATCCTTTATCTACTGGGACAGTTACTGATAAACCAAAGTTAGAATCTGAGGGGTTAGGTGGTTGTATATTTGACTTCCCTTACATGGATTGTAGCAACATTGAAAAAATGGCCCCAACTTCTGTAAGCTCCCAAAGCTTTGTAGATCAAGTGACATTCCTTAATCAAAACCACATTCCATTAGTGGTTGATATCCCCCAATCTGAATCTGCTATTGTGAATGGTTCACTTCCCCAGCTAGACATCGATGAATGGATGGTGTGTTCTTCCTCCCAACCTTTGGTTGGGCAGAACAGATCAACTGAACCTCTAACAGCTTTGCAAGAACAGTCTGTACTTCACTCTCAAGCAATAAATCTCCCTTTCCCTTCAATGAGCCAAAACATGTGGGATCCATATGTGCAAAATTTGAAGCTTTTACCCCAAGCAGACCAACAAACTTCCATCTCTCAGCAAGGGCAGTACAGCCTCAGTTGTATATCTAGTTCGAACAATTTGAGGGATTTCTCAGCCGAGAGCAACAATCAAAGTGAAATTTACAACAGTGACAATGTTGATGGTAATAACATTATAAATGATTCTATAGCTGATCTTTCTACCTCGAGTGCCATTTTGGATGAGTTTTGCTCATTCAAGGAAAGGGATTTTAAGAATCCATCAGAACGCATGGTGAACAACTTGAGTGCAAGCCAAGATGTCCAGTCTCAAATAACATCTGCAAGTCTAGTGGAGTCACATGCCTTTTCTCTGCAAGATATCCCTGATAGTTCAGGTGGTGCATCTTCAAGTCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAAAAATTCATGGCCTCAAGTAGCTGCACAGCCTGCACCTAGGCGGCGTACCTATACCAAGGTGCAAAAGGCAGGTTCTGTGGGAAGATCAATTGATGTCACTACTTTCAAGAATTATGAGGAGCTGATCCGTGCTATTGAGTGCATGTTTGGACTCCAGGGTCTGCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAGAATGATGTTCTACTTGTAGGGGATGATCCTTGGGAGGAATTTGTTGGTTGTGTCAAGTGCATCAGAATTTTATCACCTACAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAACTTCTAAACAGTGGTGCGTTGCAAGGGATCAGTGGTTGCATGTCAGGTGCCTGTACGTGA 2721 0.4274 MKLPREMKEHYGEPKTLNWELWHACAGPLVCLPQVGSLSYYFPQGHCEQVAACTRMTVTSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKDVFPISEFGLMASSHPTEFFCKTLTASDTSTHGGFSVPRRAAERLFPPLDYTIQPPSQELVVRDLHDNSWTFRHIYRGHPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDGKSQLLVGVRRGNRQQTSLPSSVLSADSMHIGVLAAAAHAAANQTLFTIFYNPRACSSEFVIPMAKYRKAIYETQLSIGLRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCSDKQNRVSSWDIETPESLFTFPSFTSSLKRPFQPGLLGNEWSALLRKPFMQVLENGTVELSNSFQNLYSEHMMKNLFKPQLVSNTGNCLWIRQEESSAKRGPLGEVNTTLPMTYQKVNLASLVSIPLSNIHCQSEPNQSSALNLHKPLKSDQLDTLHPLAKIENPLSTGTVTDKPKLESEGLGGCIFDFPYMDCSNIEKMAPTSVSSQSFVDQVTFLNQNHIPLVVDIPQSESAIVNGSLPQLDIDEWMVCSSSQPLVGQNRSTEPLTALQEQSVLHSQAINLPFPSMSQNMWDPYVQNLKLLPQADQQTSISQQGQYSLSCISSSNNLRDFSAESNNQSEIYNSDNVDGNNIINDSIADLSTSSAILDEFCSFKERDFKNPSERMVNNLSASQDVQSQITSASLVESHAFSLQDIPDSSGGASSSHVDFDESSFLQKNSWPQVAAQPAPRRRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLQGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVKCIRILSPTEVQQMSEEGMKLLNSGALQGISGCMSGACT* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1645 906 Pfam Auxin response factor 249 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr5g1645 906 ProSiteProfiles PB1 domain profile. 793 877 IPR000270 GO:0005515
Apr5g1645 906 SUPERFAMILY DNA-binding pseudobarrel domain 114 252 IPR015300 -
Apr5g1645 906 SUPERFAMILY CAD & PB1 domains 806 872 - -
Apr5g1645 906 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 897 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr5g1645 906 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Apr5g1645 906 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Apr5g1645 906 Gene3D - 789 882 - -
Apr5g1645 906 Gene3D - 120 224 IPR015300 -
Apr5g1645 906 SMART B3_2 123 225 IPR003340 GO:0003677
Apr5g1645 906 Gene3D - 287 360 - -
Apr5g1645 906 Pfam AUX/IAA family 788 879 IPR033389 -
Apr5g1645 906 CDD B3_DNA 122 223 IPR003340 GO:0003677
Apr5g1645 906 PANTHER AUXIN RESPONSE FACTOR 5 12 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1645 Apr-Chr5 20070654 20077566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1645 1 902 B3 DNA Binding Superfamily AT1G19850 54.849 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr5g1645 AUX_IAA 5.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1645 K14486 - gmx:100790289 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1645 5 20070654 20077566 Apr5g1645 5 20070654 20077566 ECH