Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1642 ATGCGCCGATTGCAAAAATCCAAGAGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTCGGTTATTCTTATCAGAGGAATCCCCCTCGCAAGTCGGGATAAGTTCTCAAGATCACCTTCAAGCCAAGACGTCATTGCTGTTACATCCAGGTGGAGCAGGTTCTGATGACATTTTGCCTCCTGGGTTTGAGGGAACTCATGCTTCAAGTCAGTTCGAGATCAAACTATCCCAAATACCAGTTATTAAGTGGATTATTCCGCCAAAGATTGTTCTAAATCTGACATGGCGAGTAGTGGCTGGGGAAGAAAGCAACGAGGTAGAGGATCAACGTCAAAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCATATCTTCCATTCCTCCAAATCCCTCTGTTTCGATTGATGTTGAAGATTCCCATTACATTGATAGTCAAACTGCTTTGATACCAATTACCCCTATTGAAGATGAAGATGCTGCAGCAGAAGCATTGTCAGCTTCCTCGGTGTCTTCCCAGTCTCTTGAATTAGCTCATGGTATATTGAAGGATTCAAACTCAGCTATAAATATGCAGTTAGCTCATGATCATGGATCTGATGTAGCTGCTGCATCTGCAGCTTTAACTAACATAGTAAAGAGCAATGAACATGGAAATTTAATTGATCATGAGTTGCTTAATAATATTCTCAACAATCCAGAAGTGATTGAGAAGTTGGTTAAAGACTATGGAGCTACAAACAATTCACAATATGTACATAACGTGGGCTCATCCTCAGTGGCTTTTTCAAATCCTCCTAATTCTATTAATCAAGGAGAAACTGTGGTACCTTCATCAATTCTTTTTTCAGGCACTTCTTCCTATGCTCCTGCAACGGCAGGTCAGGTGACACCTGTTTCTACCCAATGGCTTCCTAGGCCTGCAGTGAGTTCAGCTAATGTTTCTTCTCCAGTTGAGGTTCCTTCAACAAAGGATGTGAACTACTATAAGAGCTTAATTCAACAACATGGTGGAGAAAAACTAGAAAAAAATTCATATTCCAGTAACCGCCAGAGTCATCCGCCAGCAACAAACTATGAGACAACATATAATCAAAGAGCAAAAGTGTTAAAATCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGCTCTAGAGGATGCCGAAATGGAGATAACTGTGCATACCAGCATGATGCATCATTTCAGCCACGCGGTAATTCTGTGTCAGGGATACAAAATTCAAAGAGGATGAAAATGGATAACGAGATTAGCAGTTAA 1284 0.4081 MRRLQKSKRVSWASDLDLCQVRLFLSEESPSQVGISSQDHLQAKTSLLLHPGGAGSDDILPPGFEGTHASSQFEIKLSQIPVIKWIIPPKIVLNLTWRVVAGEESNEVEDQRQREMRVLEAIYPRISSIPPNPSVSIDVEDSHYIDSQTALIPITPIEDEDAAAEALSASSVSSQSLELAHGILKDSNSAINMQLAHDHGSDVAAASAALTNIVKSNEHGNLIDHELLNNILNNPEVIEKLVKDYGATNNSQYVHNVGSSSVAFSNPPNSINQGETVVPSSILFSGTSSYAPATAGQVTPVSTQWLPRPAVSSANVSSPVEVPSTKDVNYYKSLIQQHGGEKLEKNSYSSNRQSHPPATNYETTYNQRAKVLKSKIMKPCIFFNSSRGCRNGDNCAYQHDASFQPRGNSVSGIQNSKRMKMDNEISS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1642 427 SUPERFAMILY CCCH zinc finger 379 401 IPR036855 GO:0046872
Apr5g1642 427 ProSiteProfiles Zinc finger C3H1-type profile. 374 402 IPR000571 GO:0046872
Apr5g1642 427 MobiDBLite consensus disorder prediction 341 362 - -
Apr5g1642 427 MobiDBLite consensus disorder prediction 405 427 - -
Apr5g1642 427 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 422 - -
Apr5g1642 427 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1642 Apr-Chr5 20054354 20059960 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr5g1642 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1642 - - gmx:100783321 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1642 5 20054354 20059960 Apr5g1642 5 20054354 20059960 ECH