Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1641 ATGGGGAAATCTAGCTCCTGCTTCAGGCTCATCACTTGCGGCGGTGACGCGGCGGAGAAGGATGATTACCAAGTGTCTGAGATCATGGATTCTAATGATAAACGTGGTTGGAGTTTCTACAAGAAATCTGCAAAGCACCGTGTGCTTAGCAATACAGTGATAGCAGAGGCCCCATTTTCTGCAAATAAGGAGAGTTCAGAATGTACCAATTTTAATTTTCAACCACTTCCTGAACCCAATGTGATTGAGAAGATTTACACAACAGATTTCTCTGATGAGAAGCCCCAGTTATCCTCCTTTGAAGGCTCACAAATATCAGAAACAAAAGTCATTGCTACTGAGACTAAGGTGGATGTGAATCCACCAGAGTCTTCTGTCATTGTCATACAATCTGCTATCAGAGGGTTATTGGCTCAGAGAAAACTGCTGCAGCTTAAGAATGTGGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTCAGGAGGCATGCTGTTGGAACCCTGCGTTGTTTTCAAGCCATCATTAGAATGCAGGCCCTTGTGCGAGCTCGTTATGCTCAGCAGTCACATCTGGAAAATCATTTAAATCGCAAGGATGGCAAAAAGGATTCCTCAAAAGCTTTGGGGAATGAAAAGCACATGACCAAATCGAAAGTGAATTACACTTCCATTGAGAAGCTGCATAGCAATAGGTTTGCTCATCAGCTGTTGGAATCAACACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCTGATTCTGCTTGGAAATGGTTCGAAAGGTGGATGTCTGTATCATCAGAAGATACTGCAGAGCACAAAGAAACAAGTTCTCTGACAGAACAATCAGGCGAAAGCAAAGATAACTCTTCTGTGTTTCAATTTGAAACAGGTGTTCAATCTGAAGTTTTTCTCTGGTCAGCTGATTCAAAGTCCACGGTTGGGGATTCACTTCTCCCATCTGAGGATGAAGAAAAGCTAATTATTTATGACACTAACAACTTCAAGTTTCAAGCAAGCTGCTCCACATCATGTATTGTAAAAGATGATTCAGAACAAGTTCCTCCTGAAGAAACAATTGAAAATGATGCTAAAGTTGCTTCAGGAGAGACTGATTCCTTCCAGAATGAAAAATCAGGATCAGATGCAAGTGCACTGCCAGAGCTTAATTCTCCTCATATGAAGCCTGAAATTGCCCCACCACCTGTACTTAATTCTCTTCATCAGAGGCCTGAAATTGATTGTGAGCAGGGAAAACGATCCATGAAAAGACTTGCCTCAGACCAACTAGAGGCTGAAGGAAAGAAACTTGTAAATGGATCAAGAAAGGTCAGCAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATAGCAAATTCAGGTAGGACAAGCACTTTGTCTTATCAAGATGCAGCAGTTGAATCACAAGGAGGCACCCCTTCTGTCAGCAATGATACTGCAGATAGATCAAAGGAGTTCAAATTTGAAAATCCTGCTCCCTATCTTTCAAGGTTTGGTGGTTCCGAATGTGGCACTGAACTCTCTATTTCTTCCACTCTTGATTCACCTGACATATCAGAGGCTGGTGCTATGGAAAATGAGCGAGATGCCAAAGATTTAGTGGAAGGGATTAGAAATCTTGAGAACACAATAAACCATGATGATTCACCAAATGCTTCATGTGTCATTCCAGCTTCTAACCCAGCTATTTCTGTTTTGGATCAGTCAGAGGTTGTTGTTGTTGATGACATTAGTGGCAATGTGGGCCAATCAATGGTGGCCGAGGGCTCTGCAGAACCTGCTATTAAGAATGAGAAAAAATTGTCTGACTTGCAGAGAGAGCAGGTAGAGGCTGTTCCGCAAGATTTAAGATCATCTCCTGAAGCTTCACCTAGAAGCCATTTAACTGTTCCAGAATCACAAGGAACACCTTCAAGTCAAGTATCTATAAAACCTAAAGAAAGCAAAATCGACATGAACAGATCCAGCAAAAAACGTGGTACCCTATCATTGGGTAACAAATCACCCGCAAATCCAAATCATGAATCAGGGTCAAGGGGCAGTAGTGAACAACTGCCTAAAGATCAGCAGAATGGGAAGAGGCGCAATTCTTTTGGCTCAGTAAAACCTGATCACATTGATCAAGAACCTAGAGATAATAGTAGTAACAATAATTCTCTTCCCCATTTCATGCAAGCTACAGAATCTGCTAGGGCCAAGATCAATGCGAATAATTCTCCAAGGTCAAGTCCAGATGTGCATGAACGAGACATCCAAGTTAAGAAGAGACATTCTTTACCTGGTGCCACTGGTAGGCAGGTTTCTCCACGCATCCAACTATCAATGTCTCAGGCACAGCAGAGTGCAAAAGGAAACAATGTACATCCTCCTCAAGAGAGAAAATGGCTAAGGTGA 2439 0.4231 MGKSSSCFRLITCGGDAAEKDDYQVSEIMDSNDKRGWSFYKKSAKHRVLSNTVIAEAPFSANKESSECTNFNFQPLPEPNVIEKIYTTDFSDEKPQLSSFEGSQISETKVIATETKVDVNPPESSVIVIQSAIRGLLAQRKLLQLKNVVKLQAAVRGHLVRRHAVGTLRCFQAIIRMQALVRARYAQQSHLENHLNRKDGKKDSSKALGNEKHMTKSKVNYTSIEKLHSNRFAHQLLESTPKNKPIHVKCDPSKADSAWKWFERWMSVSSEDTAEHKETSSLTEQSGESKDNSSVFQFETGVQSEVFLWSADSKSTVGDSLLPSEDEEKLIIYDTNNFKFQASCSTSCIVKDDSEQVPPEETIENDAKVASGETDSFQNEKSGSDASALPELNSPHMKPEIAPPPVLNSLHQRPEIDCEQGKRSMKRLASDQLEAEGKKLVNGSRKVSNPAFIAAQSKFEELSSIANSGRTSTLSYQDAAVESQGGTPSVSNDTADRSKEFKFENPAPYLSRFGGSECGTELSISSTLDSPDISEAGAMENERDAKDLVEGIRNLENTINHDDSPNASCVIPASNPAISVLDQSEVVVVDDISGNVGQSMVAEGSAEPAIKNEKKLSDLQREQVEAVPQDLRSSPEASPRSHLTVPESQGTPSSQVSIKPKESKIDMNRSSKKRGTLSLGNKSPANPNHESGSRGSSEQLPKDQQNGKRRNSFGSVKPDHIDQEPRDNSSNNNSLPHFMQATESARAKINANNSPRSSPDVHERDIQVKKRHSLPGATGRQVSPRIQLSMSQAQQSAKGNNVHPPQERKWLR* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1641 812 MobiDBLite consensus disorder prediction 467 501 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 467 494 - -
Apr5g1641 812 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Apr5g1641 812 Pfam IQ calmodulin-binding motif 146 163 IPR000048 GO:0005515
Apr5g1641 812 Pfam Protein of unknown function (DUF4005) 718 794 IPR025064 -
Apr5g1641 812 MobiDBLite consensus disorder prediction 727 757 - -
Apr5g1641 812 PANTHER PROTEIN IQ-DOMAIN 32 1 802 - -
Apr5g1641 812 SMART iq_5 144 165 IPR000048 GO:0005515
Apr5g1641 812 SMART iq_5 121 143 IPR000048 GO:0005515
Apr5g1641 812 MobiDBLite consensus disorder prediction 370 389 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 634 661 - -
Apr5g1641 812 Coils Coil 538 558 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 600 812 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 672 712 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 780 802 - -
Apr5g1641 812 ProSiteProfiles IQ motif profile. 144 173 IPR000048 GO:0005515
Apr5g1641 812 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Apr5g1641 812 MobiDBLite consensus disorder prediction 272 293 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 195 213 - -
Apr5g1641 812 Gene3D - 123 169 - -
Apr5g1641 812 MobiDBLite consensus disorder prediction 370 410 - -
Apr5g1641 812 PANTHER IQ-DOMAIN 5-RELATED 1 802 - -
Apr5g1641 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 191 IPR027417 -
Apr5g1641 812 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1641 Apr-Chr5 20046284 20052147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1641 116 812 IQD Protein Family AT1G19870 36.960 2.01e-104 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1641 - - gmx:100799424 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1641 5 20046284 20052147 Apr5g1641 5 20046284 20052147 ECH