Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1638 ATGGATGATGCCGGGCATCGGGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCAATGAAGCAGATTATGACAACTATGGCTGAAAGAGATGCAGCCATCCAGGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGATGTGGCATTCCTGCAGCGTGATGCTGCAATTGCAGAACGAAACAATGCAATTATGGAGCGAGATAATGCAATTGCAACTCTTCAGTATCGAGAAAACTCTTTGACTAGTGGCAGTATGCCATCATGTCCTCCAGGATGCCAAATTTCACGTGGGGTCAAGCATATACATCATCCCCAGCAACAGGTACATCATTTACCTAACATTGGCGATGCTTCTTACAGCGCCCGGGAAATGCACACTACTGATGCCCTCCCTGCAGCCCCCATCCCTACTGAGGCTGGGAAATCACGGCGAGCCAAACGGCCAAAGGAACCTAAGTCAACTTCGCCTAATAAAAAGACTTCAAAAGCAGCAAAAAAAGTCAAGAAGGAAAGTGAAGACTTGAATAAGGTTATGTTTGGCAAGGCGCATGAGTGGAAGAGTGGTCAGGAAATGGTTAACGGAGGTGATGATCTTAACAAGCAGTTAGCAGTGTCAAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGACGAGTCAACCATGCCACCGCCGGTATGCTCTTGTACTGGTGTTCTGAGACAGTGTTACAAATGGGGTAATGGGGGCTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCCGTGCCCAACAAGAGGCATGCACGGGTAGGTGGTCGGAAGATGAGTGGAAGTGCTTTCAACAAGCTGCTCAGTAGGCTTGCAGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGAACAAACCGATACATCACAATAAAATAG 1014 0.4763 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMTTMAERDAAIQERNLALSEKKAALAERDVAFLQRDAAIAERNNAIMERDNAIATLQYRENSLTSGSMPSCPPGCQISRGVKHIHHPQQQVHHLPNIGDASYSAREMHTTDALPAAPIPTEAGKSRRAKRPKEPKSTSPNKKTSKAAKKVKKESEDLNKVMFGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPPPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1638 337 MobiDBLite consensus disorder prediction 146 189 - -
Apr5g1638 337 MobiDBLite consensus disorder prediction 158 174 - -
Apr5g1638 337 MobiDBLite consensus disorder prediction 1 15 - -
Apr5g1638 337 Coils Coil 51 85 - -
Apr5g1638 337 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g1638 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 337 - -
Apr5g1638 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Apr5g1638 337 PANTHER - 1 337 IPR010409 -
Apr5g1638 337 SMART GAGA_bind_2 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1638 Apr-Chr5 20021550 20025612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1638 65 337 BBR or BPC Transcription factor family AT5G42520 65.517 9.44e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Apr5g1638 GAGA_bind 5.1e-109 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1638 - - gmx:100783502 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1638 5 20021550 20025612 Apr5g1638 5 20021550 20025612 ECH