Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1630 ATGAAGATCCACTGCGACGCTTGTAACAAACACCACGCTTCCATTTTCTGCACCGCCGACGAAGCCGCCCTCTGCGACGCCTGCGACCACCGTGTCCACCATGCCAATAAACTCGCCTCCAAACATCAACGCTTCTCTCTCACCCAACCTTCTGCAAAACACCATTCCACCTGTGATGTTTGCCAGGAGAGAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACTTTTCCATTCATTCTGCTAACGACCTTACCAAGAACCATAACAGGTTTCTTTTCACTGGGATTAGGCTCTCTGCTACTTGCACGCTTTATTCATCAACACCCTCTACTTCTTCTTCCAATTCCAAGAAAAACCTTGTTCTCGATTCACATCCACCTTTGATGACCAAGGCTTCGAATTCTCCTTCAACAGTGCCAACTCCTGTTACTATGAATACCAATGAAGAAGCTGGTTTCACGAGTAGCATATCGGAGTACTTGATCAACACTATCCCTGGTTGGAAGTTCGAAGATTTCCTCGACTCACCTTCTGTTCCCTTTGCTTCCTCTAAGAATGGTGATGAAATGTTGTCACTGCTTGATGGTGATATCGATAAGGGAAATTTGGTTTCTTTTTCGGCCGGTGGTATATGGGTTCCTCAAGCACCTTTTTCTATACAAATGGATGGGCAAAATGGGTACAGAGAGACAAGGGAAGGAAGCAACAGATCAAGGTCTGGAGATGATAATTTCATAGTTCCACAGTTAAGCCCTCCCATCATGAATGCATCCAAGAGACCAAGACTTCTGTGGTAA 819 0.453 MKIHCDACNKHHASIFCTADEAALCDACDHRVHHANKLASKHQRFSLTQPSAKHHSTCDVCQERRAFVFCQQDRAILCKECDFSIHSANDLTKNHNRFLFTGIRLSATCTLYSSTPSTSSSNSKKNLVLDSHPPLMTKASNSPSTVPTPVTMNTNEEAGFTSSISEYLINTIPGWKFEDFLDSPSVPFASSKNGDEMLSLLDGDIDKGNLVSFSAGGIWVPQAPFSIQMDGQNGYRETREGSNRSRSGDDNFIVPQLSPPIMNASKRPRLLW* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1630 272 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Apr5g1630 272 Gene3D Classic Zinc Finger 1 97 - -
Apr5g1630 272 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 269 - -
Apr5g1630 272 MobiDBLite consensus disorder prediction 229 272 - -
Apr5g1630 272 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Apr5g1630 272 SMART bboxneu5 4 47 IPR000315 GO:0008270
Apr5g1630 272 SMART bboxneu5 53 100 IPR000315 GO:0008270
Apr5g1630 272 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 269 - -
Apr5g1630 272 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr5g1630 272 CDD Bbox1_BBX-like 5 47 - -
Apr5g1630 272 CDD Bbox1_BBX-like 58 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1630 Apr-Chr5 19948397 19949959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1630 1 272 C2C2-CO-like Transcription Factor Family AT1G75540 41.994 1.69e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1630 - - gmx:100785978 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1630 5 19948397 19949959 Apr5g1630 5 19948397 19949959 ECH