Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1628 ATGGCTCGTGGAAAGATCCAGATCAAGAGGATTGAGAACACCACCAACCGCCAAGTCACTTACTCTAAACGACGCAACGGTCTCTTCAAAAAGGCCAACGAACTCACCGTTCTCTGCGATGCTAAGGTTTCCATTATCATGTTCTCCAGCACTGGCAAACTCCACGAATACATTAGCCCCTCCACCTCGACAAAGCAGTTCTTCGACCAGTACCAGATGACTCTAGGAATTGATCTCTGGAGTTCTCATTACGAGAGTATGCAAGAGAACTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTTTGAACGATGTGAACATGGAGGATCTGAGACTCCTTGAGGAGGAAATGGACAAGGCCGCCAAAGTTGTTCGTGAGCGTAAGTACAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAGAGAAGTGCACAACAGACTTCTGCGTGACTTGGATGCAAGAGCGGAAGATCCACGCTATGGATTGATAGACAATGGAGGGGAGTATGAGTCTGTGATGGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCCTACAGCCAACCCATCCTAATGCCCATTGCGGAGCAGGCTCTGATCTTACAACTTACCCCTTACTTTTCTAG 681 0.4626 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTLGIDLWSSHYESMQENLKKLKEVNRNLRKEIRQRMGDCLNDVNMEDLRLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRYGLIDNGGEYESVMGFSNLGPRMFALSLQPTHPNAHCGAGSDLTTYPLLF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1628 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Apr5g1628 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Apr5g1628 226 Coils Coil 84 111 - -
Apr5g1628 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 Coils Coil 151 171 - -
Apr5g1628 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Apr5g1628 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr5g1628 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr5g1628 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g1628 226 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g1628 226 PANTHER APETALA3 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1628 Apr-Chr5 19924446 19927600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1628 1 225 MADS-box Gene Family AT3G54340 57.143 3.89e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr5g1628 K-box 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1628 K09264 - gmx:547720 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1628 5 19924446 19927600 Apr5g1628 5 19924446 19927600 ECH