Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1622 ATGGCTGATTCAGGCTCAGCCTCTTCTGAGAGAATGTGGTGCTCCATCCCTGAAAGAATTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTATGCTGGCTTCCATGTGGTCTCAAGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACATTATTGCTTTTCTTCTTCTCGTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGACCTGCCCTTACCTTAAAACTCCTCTTAAACTTCTTTCTTCTGGCGCTTGTCGGGATTACAGCCAACCAAGGTTTCTACTTGCTTGGCTTGGACAACACATCCCCAACCTTTGCATCAGCCATTCAGAACTCAGTCCCAGCCATTACATTTCTCATGGCAGCCATACTGAGGATAGAGCAAGTGCGGCTGAGGAGAAAGGATGGGATAGCAAAGGTGGCAGGAACGGTATTCTGTGTGGCTGGGGCAACGGTGATTACACTTTACAAGGGTCCAACAATATATAGTCCAACTCCACCTCTAAACAGCAATGAAGAAGTAGTATTTGACTTTAGCACACTCTCGCTGGGCGATGCAAAGGGCAAGAACTGGACCCTTGGTTGCCTCTACCTGATAGGGCATTGCTTGTCTTGGTCTGGTTGGCTTGTGTTGCAAGCACCTGTCCTCAAGAAGTACCCTGCTCGCCTCTCTGTCACTTCCTATACATGCTTCTTTGGACTCCTCCAATTCCTTGTCATTGCTTTGATCGTTGAAAGAGATTCTCAAGCTTGGATTTTCCAATCTGGTAGTGAAGTTTTCACTATTTTCTATGCGGGAGTGGTGGCATCCGGAATTGCCTTCGCTGTACAGATATGGTGCATCGATAGAGGTGGTCCTGTGTTCGTTGCCGTGTATCAACCTGTTCAAACTCTTGTTGTCGCTATTATGGCTTCCATTGCTTTAGGCGAAGAGTTCTACTTAGGCGGGATCATTGGGGCAGTGTTGATCGTTGTGGGACTTTACCTAGTCTTGTGGGGTAAAAGTGAAGAGAAGAAGTTTGCAAAGGAACAAGTTGCAATTACATCCACTCCGGAGCATAGCAACATAAGGACCGCAAGCCATGCCAAAACATCACTTAATCAACCTCTTCTCCCTTCATCAACGGAAAATGTGTGA 1164 0.4708 MADSGSASSERMWCSIPERIQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLVPFAYFLEKKERPALTLKLLLNFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIEQVRLRRKDGIAKVAGTVFCVAGATVITLYKGPTIYSPTPPLNSNEEVVFDFSTLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLVIALIVERDSQAWIFQSGSEVFTIFYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKFAKEQVAITSTPEHSNIRTASHAKTSLNQPLLPSSTENV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1622 387 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Apr5g1622 387 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020|GO:0016021
Apr5g1622 387 PANTHER WAT1-RELATED PROTEIN 14 354 IPR030184 GO:0016021|GO:0022857
Apr5g1622 387 PANTHER WAT1-RELATED PROTEIN 14 354 - -
Apr5g1622 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 344 - -
Apr5g1622 387 MobiDBLite consensus disorder prediction 367 387 - -
Apr5g1622 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1622 Apr-Chr5 19865272 19868672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1622 1 387 Nodulin-like Gene Family AT1G75500 73.402 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1622 - - gmx:100786714 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1622 5 19865272 19868672 Apr5g1622 5 19865272 19868672 ECH
Apr9g0550 9 7703109 7706650 Apr5g1622 5 19865272 19868672 PCT