Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1621 ATGAGAATTGATGAGAAAAAGCAGCTGAAAAAGACAGCACAGGCCAGCTCCAGGAAGGGTTGCATGAGAGGTAAAGGAGGCCCTGAGAATGCAAGTTGCACCTACAAAGGTGTGAGACAGAGAACTTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAACCGTGGTGCACGCCTTTGGCTTGGGACATTTGAGACCTCTCATGAGGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCAGATGCCAAGCTCAATCTACCAGAGCTCTCTGTGTCAATGCAACCTCAGTGTCCACCATCTTCTGTTACCATTCCAATGGAAAACATGCAGCAGCCTCAAATTCAAAACAACTTAGAAATGGTCACTTATCCTAGTTTCAACACCAATCCTGCACTTTCCATGGCTTCTCAACAAGTAGGAGTTGGACCAATATACACTAGTGACTCAGTTGTGTCTCTTCCCTTGGATTCCAACCCTAATCCTGTTGAAACTTATCCAAAACCCATGGAGAATGAGGGGGAGTTCTGTCCCTCATGGGGAACTATGACCAACGAGGGTTTGCCAGTTTTAGATGAGTCCATTTGGGCTGAAGCTGCTATGTCCCTAGATTTTCCTATGATTCCAGAGGTTGAAATTTACCCGACGGGAAACTTGGGAGATGCGAGTCTGTGGGACTCTATGCAAACTCCATGGTGCATGTAA 714 0.4692 MRIDEKKQLKKTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSVSMQPQCPPSSVTIPMENMQQPQIQNNLEMVTYPSFNTNPALSMASQQVGVGPIYTSDSVVSLPLDSNPNPVETYPKPMENEGEFCPSWGTMTNEGLPVLDESIWAEAAMSLDFPMIPEVEIYPTGNLGDASLWDSMQTPWCM* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1621 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 4 233 - -
Apr5g1621 237 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 233 - -
Apr5g1621 237 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Apr5g1621 237 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 MobiDBLite consensus disorder prediction 1 33 - -
Apr5g1621 237 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Apr5g1621 237 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1621 Apr-Chr5 19852949 19853662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1621 6 234 AP2-EREBP Transcription Factor Family AT1G75490 49.145 4.72e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr5g1621 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1621 - - gmx:100790057 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1621 5 19852949 19853662 Apr5g1621 5 19852949 19853662 ECH
Apr9g0549 9 7678137 7678868 Apr5g1621 5 19852949 19853662 PCT