Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1620 ATGGACCTCGATCCTCGTCAATACGATAACGTTGCTATAAATGATAATGACATCCACAATGTTGTTCTGTCATATCTTATACATAATTGCTATAAAGAATCAGTGGAGTCATTCATTGCTTGCACCGGGATGAAGCAGCCAGCAGATTATTTGGAGGACATGGAGAAAAGGAAAAGAATCTTTCACTTTGCACTAGAGGGAAATGCACTTAAGGCTATTGAGCTTACAGAACAGCTGGCGCAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTTTTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCCAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTCGGAAAGGAGCACAAATATATGGAAAAGCTCGAACTGCCAATGTTGCAGGACTTTATGGCCCTTCTCGCTTATAAGGAGCCAGAGAAATCCCCGATGTTTCATCTCCTCAGCTTAGAGTATCGACAACAGGTTGCAGATAGTTTGAATCGAGCTATTCTTGCACACTTGAACCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACTGCGGTAAGACAATGCTTGAGTCAAGAAGCTGGCAAGGATGGGCCCCCACCATTTTCCTTGAAGGATTTTCTCAAAAGTTGA 663 0.4299 MDLDPRQYDNVAINDNDIHNVVLSYLIHNCYKESVESFIACTGMKQPADYLEDMEKRKRIFHFALEGNALKAIELTEQLAQDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLSPFGKEHKYMEKLELPMLQDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATAVRQCLSQEAGKDGPPPFSLKDFLKS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1620 220 PANTHER RAN BINDING PROTEIN 9-RELATED 9 219 - -
Apr5g1620 220 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Apr5g1620 220 Pfam CTLH/CRA C-terminal to LisH motif domain 54 196 IPR024964 -
Apr5g1620 220 SMART toby_final6 106 206 IPR013144 -
Apr5g1620 220 SMART ctlh 53 110 IPR006595 -
Apr5g1620 220 MobiDBLite consensus disorder prediction 201 220 - -
Apr5g1620 220 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Apr5g1620 220 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 9 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1620 Apr-Chr5 19846997 19850434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1620 K23338 - gmx:100800484 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1620 5 19846997 19850434 Apr5g1620 5 19846997 19850434 ECH
Apr9g0547 9 7666528 7669794 Apr5g1620 5 19846997 19850434 PCT