Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1614 ATGTATCCCAACCAAGCCTTTTCTTCAGGGTCCTATGCGGACATGATGTCCGGGAGTTCTTTGTTAGCTCATAACTACAATGAATCTGTAGGAGGGCAAAATGGGGTGAAGTTTATCACGGCTATGGGGGACACAGTGACCATGCAGTCTATTGATGGGCATTCCAATGCTGCAACTGGTGATCCAGCATGCAACTCTTTTGCTGGAGATTCCCCAGTTGTTCCAAGGACACAAATGGGCATTGTAGATAGAGAGCAAAACATGCAGTGCCAGGGCCTATCTCTTAGTCTTGGAACGCTCATGCCTTCTACTGCATCTGTCCCTTCATTTCAGTATCAATATCCTGACACTGGTCTTTTACCACTAATGACTGATTGTCTCCCAAACTTAAAGGGAACTATGTCTCTCAAAGATGATGAGGCCAACCTACATAAGGAGTTGAGAAGTGCTGCTGAATGCATGGCATCTGTATCTTCTGGGGGCTTTCATGACATTACCAAAAGGGAGGGTTTTTACAACCCTCACCCCTCAATGTGTCTCAAAGAAGTCCACTCTGATCCATGCTTGCAAGGATCACCAGGTTTTTCCAACAGCGTCCTAAACTCCCAATACCTTAAAGCGGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGGAAGGCTTTGAAGCAACCTGGAATGGAAAAACAAGAAAACTGCCGTGACATTGGAAAAGATAGCTCTAAAGATTCAGATGGAAAATCTGCAAATGGTTCTACTGCCAATCCTTCTTGTGAGCTATCTCCCGGAGAACGGCAGAACTTGTTGGACAAGAAAACAAAGCTTCTGTCGATGTTGGATGAGGTAGATAAAAGATACAGACAATACTGCCATCAGATGCAGATTGTGGTGTCATCTTTCGATATGGTGGCTGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTGAGAACAATTTCTCGCCACTTTCGCTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACACAAAGGAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCCCAGAGGGGTCTTCCTGAAAGTTCTGTTTCAATTCTTCGGGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAAGATTCAGAGAAAATTATGCTAGCAAGGCAAACAGGCTTGACCAGGAACCAGGTCGCAAATTGGTTCATCAATGCACGGGTGCGACTTTGGAAGCCTATGGTTGAGGAAATGTACAAAGAAGAGTTTGGAGATTCTGAAATGAACTGCAACCTTTCATCTGAAAACAATGGCAAAGAACTGGAGAGAGGGGTACATGTAGAAAATGGGGTGATGGATTCTGGAACAAGGAAATTGCAGGGTAATCAAAACCAAAGGCTTGGGATGAACCACAGCAGTAGCAACCTTTATGTGGCAACCAACCAGAATGGTGATGGCAGCTTAATGGGTTCTTCCACTGCTGCTGCTGCCACATATGATTTATCAGAGTTGGGTAACTTTACAGTGGGTGGCCACGTTTCACTTGCATTGGAGTTGAGGAACTGTGAAAGCGATGGATTTGCCATGTCCGATGATGCCATCCACAAAAGACGTAATCAAACATTGGCTTCTTCCCCGGATGCTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAGCACAGGTTTGGCAATCCTCATCTGTTGCATGAGTTTGTCGTATGA 1794 0.4526 MYPNQAFSSGSYADMMSGSSLLAHNYNESVGGQNGVKFITAMGDTVTMQSIDGHSNAATGDPACNSFAGDSPVVPRTQMGIVDREQNMQCQGLSLSLGTLMPSTASVPSFQYQYPDTGLLPLMTDCLPNLKGTMSLKDDEANLHKELRSAAECMASVSSGGFHDITKREGFYNPHPSMCLKEVHSDPCLQGSPGFSNSVLNSQYLKAAQELLDEIVNVRKALKQPGMEKQENCRDIGKDSSKDSDGKSANGSTANPSCELSPGERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNGKELERGVHVENGVMDSGTRKLQGNQNQRLGMNHSSSNLYVATNQNGDGSLMGSSTAAAATYDLSELGNFTVGGHVSLALELRNCESDGFAMSDDAIHKRRNQTLASSPDADLLDYHFTDSGKQQHRFGNPHLLHEFVV* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1614 597 Pfam Associated with HOX 199 332 IPR006563 -
Apr5g1614 597 MobiDBLite consensus disorder prediction 226 245 - -
Apr5g1614 597 SMART prehox3 193 333 IPR006563 -
Apr5g1614 597 Gene3D - 371 448 - -
Apr5g1614 597 MobiDBLite consensus disorder prediction 246 262 - -
Apr5g1614 597 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Apr5g1614 597 MobiDBLite consensus disorder prediction 226 264 - -
Apr5g1614 597 CDD homeodomain 374 435 IPR001356 GO:0003677
Apr5g1614 597 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 562 - -
Apr5g1614 597 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 562 - -
Apr5g1614 597 SUPERFAMILY Homeodomain-like 375 441 IPR009057 -
Apr5g1614 597 SMART HOX_1 374 438 IPR001356 GO:0003677
Apr5g1614 597 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1614 Apr-Chr5 19796062 19800799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1614 194 596 Homeobox Transcription Factor Family AT2G16400 50.600 9.86e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr5g1614 POX 9.5e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1614 - - gmx:100791641 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1614 5 19796062 19800799 Apr5g1614 5 19796062 19800799 ECH