Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1613 ATGTCCAACTCCATTACTCATCAAAACCATTTTGAGAACCAAGAGCTTGATGCTTATGGCTCTTCCATGAGGAACAACAATGCATTCCCTGAGTCAATAGGAGCATTTCCCAGCATTCAATCTATTGGAGAGAGAATATCAAGATCAGTGGACCTTGTGCAAGGATTAGCTGAGGGCTCTGAGATCAGCCACACAAGGCACTTGATGGATCTTCTTGGAGCAGCAAACGAGAGCAATCACCACCAACTTCAAGGCCTTTCCCTTTCTTTAGGCTCTCACATGCTTGTCCCTTCTGATGAATACAGGCACCAAAGAACCTTAAACCCGGGTCTCATGAACCCCAATTACTTCATTCCTGGACAAGAGGCAAGGGAAGCCTGTAATCCTGCAGTGGAGCATCTAACCAGTGACTACTTTTTCACCAGCGGCAGTGGCACTTTTGCTTCATCTTCTGCTCCTTTGAACCGTTCTCCTTCCACTTCTTATGGTGCTGAGTCTTTTACTTCTGTCATTGGCAACTCAAGATACCTCAAACCGGTACAATCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAACGTGGTTGATAGAATCAATGAAAAGTATGCTGAGAAGTTGTTTCATGGGAGTAGGAGGACACTTTCCTCAGAGTTAAAAGCGGAGTTGAGGAATAATGAACCTTTATTATCTGACAAACATGAACATCAAATCAAAATTGCAAGGTTGATTTCTTTGTTGGATGAGGTTGAAAGTAGGTGTGAGAAATACTACCATCAAATGGAGGAAGTGGTGGCATCTTTTGAAATGATAGCGGGTCTTGGAGCTGCCAAGTGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGGAAACTTTTTCAGGATTTACCTAAAATCAGTAGTGGCTTATCTCAACTAAGCTTGTTTGATAGGGACACTAGACATAGTAGAGTGTCTCTCCAACAACTTGGGGTGATCCAAAGCCAACGCCAGGTGTGGAGACCCATCAGAGGATTGCCTGAAACCTCTGTGGCAATTCTTCGTTCTTGGCTCTTTGAGCACTTTCTCCATCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTATAAAGAAGAGTTTGGAGACTCTTCTGAAGACTCCAACACTGCTGCTAACTACATGACAAGGGAAGATACCACAGACTGTGTGGAGGATTGA 1338 0.4312 MSNSITHQNHFENQELDAYGSSMRNNNAFPESIGAFPSIQSIGERISRSVDLVQGLAEGSEISHTRHLMDLLGAANESNHHQLQGLSLSLGSHMLVPSDEYRHQRTLNPGLMNPNYFIPGQEAREACNPAVEHLTSDYFFTSGSGTFASSSAPLNRSPSTSYGAESFTSVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFHGSRRTLSSELKAELRNNEPLLSDKHEHQIKIARLISLLDEVESRCEKYYHQMEEVVASFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDTRHSRVSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNTAANYMTREDTTDCVED* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1613 445 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 430 - -
Apr5g1613 445 Pfam Associated with HOX 170 298 IPR006563 -
Apr5g1613 445 Pfam Homeobox KN domain 367 406 IPR008422 GO:0003677|GO:0006355
Apr5g1613 445 Gene3D - 345 425 - -
Apr5g1613 445 ProSiteProfiles 'Homeobox' domain profile. 369 410 IPR001356 GO:0003677
Apr5g1613 445 SMART prehox3 165 300 IPR006563 -
Apr5g1613 445 MobiDBLite consensus disorder prediction 420 445 - -
Apr5g1613 445 CDD homeodomain 350 411 IPR001356 GO:0003677
Apr5g1613 445 SUPERFAMILY Homeodomain-like 356 418 IPR009057 -
Apr5g1613 445 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 3 430 - -
Apr5g1613 445 SMART HOX_1 350 414 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1613 Apr-Chr5 19792359 19796206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1613 81 425 Homeobox Transcription Factor Family AT1G19700 43.014 9.53e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr5g1613 POX 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1613 - - gmx:100792161 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1613 5 19792359 19796206 Apr5g1613 5 19792359 19796206 ECH