Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1604 ATGAAGGATGAGAACAAAGATATGAATAAGAAGCTCTCGCTCAATGCCCTTTTTTCAGGAGACTTCTACACCAGTGCTCAAAATTATTCTAATGTTGGTGGTACTAGTGTACCAAGTAGAGGAAACTTTAGCCAGATATACTCCACTATAAACATCTCAAATTTGAATCACTTATCTACTTCCCCAGAAATTTCAAGCACCTTGGATAGCAGCATGCAATCCTTAGATATATTAACCTCAACAAGATCATTAAGTGAGGAGTTCTGTCAACATTCACAAGATCATGGTCTTGGTAGATTTGTTGACAACCTTTCTTTTCGTCTTCATCATATGCAATATCCCACTGATAGGTCCACACGTAGTAACTCCAGTAATCCATCACACTTCACCAGTGGCACGGTAGAAACAAAGAGACCCCGTGCTTTGATGGAGTCATTGGCTTCTCAGTCTCAAATAGCATCGAAGAAATCACGGTTGGAATCACGCTCTTCATGCCCACCCTCTAAGGTTAGGAAAGAAAAATTAGGAGATAGGATTGCGGCTCTTCAGCAGTTGGTGGCTCCTTTTGGCAAGATGGACACGGCATCCGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTAAGCGTTCCATACATGAAGTCATCGCAGAACCAGACCAACAGAATGATGCAAGGGGGTTCAACCATAGACGATGCAAATAAAGAACCAAAGCAAGATCTTAGAAGTCGAGGTCTCTGTCTCGTGCCATTGTCGTATGGTGTGGCAACAGCCAAATTAAATGGAGCAAACTTAATATAG 822 0.4197 MKDENKDMNKKLSLNALFSGDFYTSAQNYSNVGGTSVPSRGNFSQIYSTINISNLNHLSTSPEISSTLDSSMQSLDILTSTRSLSEEFCQHSQDHGLGRFVDNLSFRLHHMQYPTDRSTRSNSSNPSHFTSGTVETKRPRALMESLASQSQIASKKSRLESRSSCPPSKVRKEKLGDRIAALQQLVAPFGKMDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQTNRMMQGGSTIDDANKEPKQDLRSRGLCLVPLSYGVATAKLNGANLI* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1604 273 MobiDBLite consensus disorder prediction 115 134 - -
Apr5g1604 273 Gene3D - 168 237 IPR036638 GO:0046983
Apr5g1604 273 MobiDBLite consensus disorder prediction 114 172 - -
Apr5g1604 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Apr5g1604 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 223 IPR036638 GO:0046983
Apr5g1604 273 PANTHER OS01G0105700 PROTEIN 17 261 - -
Apr5g1604 273 MobiDBLite consensus disorder prediction 143 164 - -
Apr5g1604 273 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 261 - -
Apr5g1604 273 CDD bHLH_AtbHLH_like 166 216 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1604 Apr-Chr5 19728085 19731892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1604 3 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 47.143 1.28e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1604 - - aprc:113866294 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1604 5 19728085 19731892 Apr5g1604 5 19728085 19731892 ECH