Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1589 ATGGGTTGGACACGAGAAGAGAATAGGCGTTTTGAGGATGCTCTTGCGGTTCATGGCCCTGACGACCCAAATCGGTGGCAACATGTGGCCAACGCTGTTGGTGGAAAATCCGTAGAAGAGGTTAAAGTGCACTACGAGATTCTCAAGGAGGATGTCATTCGAATAGAGCGTGATCAAATACCACTACCCAGGTATAGAGGTGCTGCCATCAACGCAAGACAGATTGAAAATGAGCAAAGGCGAATGAGGAATCTAAATATCCAGTGA 267 0.4719 MGWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVEEVKVHYEILKEDVIRIERDQIPLPRYRGAAINARQIENEQRRMRNLNIQ* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1589 88 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Apr5g1589 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Apr5g1589 88 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Apr5g1589 88 CDD SANT 3 49 IPR001005 -
Apr5g1589 88 Gene3D - 2 51 - -
Apr5g1589 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Apr5g1589 88 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Apr5g1589 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Apr5g1589 88 SMART sant 3 51 IPR001005 -
Apr5g1589 88 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1589 Apr-Chr5 19652044 19653239 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr5g1589 Myb_DNA-binding 6.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1589 - - gmx:100789698 160.614