Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1572 ATGACGGACCCTCCCAATCCTTCACCAATCACACACTCTTCACCTCAACCACTCCCTCCTTCCAAAAAGAAGCGAAGCCTCCCTGGAATGCCAGATCCAGACGCTCAAGTTATTGCTTTATCACCAAAGACTCTGTTGGCCACCAACCGTTTCGTCTGCGAGATCTGCAACAAAGGATTCCAACGCGACCAGAACCTCCAGCTTCACCGGCGAGGCCACAACCTGCCGTGGAAGCTGCGTCAGCGAGGGAGCAAGGAAATCCGCAAGAAAGCCTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCTCTAGGGCGCTGGGTGACCTCACCGGCATTAAGAAGCACTTTTGCAGAAAACACGGCGAAAAGAAGTGGAATTGCGAACGTTGCTCCAAGAAATACGCTGTGCACTCCGATTGGAAGGCTCATATGAAGACCTGCGGTACTAGAGAGTATAGATGTGACTGCGGCACCTTGTTCTCTAGGAGGGATAGCTTCATAACGCACCGAGCGTTTTGCGATGTATTAGCTAAAGAGAGCGCCAGGGCCCATGTCCAAGCCCAAGTCGGGGCTTCTTCGCCGCCTACGCCTCCGCTTACTCCCTCTACCACTGTGGTGTCTCCGACTCTCTCCATTCAGAGCTCAGAAATTCCGGAAAACCCAACGAAGATGTCGCCGCCGTCTTCGAACGCAACGTGTATAGTGAACGGTGTGACAGGCAGCACCCCTTCTACTTCAACTTGCAGCACTGTTTTTGCAAGTGTGTTGGCATCGTCAACAACAACGGCGACTCCTATCCAATCACCCTCAACTTCCTCATTCTCCAATCTCATGTCAAGCATGGCTCACCCGGAATGCCCCAATAGCATGTCTAGTATGACAGAGCCCACATCCCTCTCTCTCTCCACACCGCTCTATCTCTCTAATAATGACCCACCCCTCTTCACAGCATCTCCACAACCCGCATTATCTGCCACTGCGTTACTCCAAAAGGCAGCTCAAATGGGTGCATCCAATGCATCCTTGCTTCGGGGTTTAGGCTTAGCAGCATCATTTTCCGTCGGTAAAGATGACAGTGTTGGCACCCCAACAATACAATGGAACGGCCAAGTAAAGCAAGAGAATCACCCAGTGGTAGATAATCTTGGGCTTGGGCTTCCCTGTGGGAATGGGGGTGTAATGGGCCCGTCTAGCTCATTTGTTGGCCCGCCCATGACTCGTGATCTTCTTGGGCTGAGCATCGGTGACGGGGCAAGCAGGGGCGGTCTCTCTGCTTTACTTACTTCATTTGGAGGGAACTTTGATTCATCCGGTGAAGGAGGAGGACTTGGGCAGTAG 1344 0.5275 MTDPPNPSPITHSSPQPLPPSKKKRSLPGMPDPDAQVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEIRKKAYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWNCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAKESARAHVQAQVGASSPPTPPLTPSTTVVSPTLSIQSSEIPENPTKMSPPSSNATCIVNGVTGSTPSTSTCSTVFASVLASSTTTATPIQSPSTSSFSNLMSSMAHPECPNSMSSMTEPTSLSLSTPLYLSNNDPPLFTASPQPALSATALLQKAAQMGASNASLLRGLGLAASFSVGKDDSVGTPTIQWNGQVKQENHPVVDNLGLGLPCGNGGVMGPSSSFVGPPMTRDLLGLSIGDGASRGGLSALLTSFGGNFDSSGEGGGLGQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1572 447 Gene3D Classic Zinc Finger 47 74 - -
Apr5g1572 447 Pfam Zinc-finger of C2H2 type 51 73 - -
Apr5g1572 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Apr5g1572 447 MobiDBLite consensus disorder prediction 1 26 - -
Apr5g1572 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 440 - -
Apr5g1572 447 SMART c2h2final6 127 147 IPR013087 -
Apr5g1572 447 SMART c2h2final6 92 122 IPR013087 -
Apr5g1572 447 SMART c2h2final6 51 73 IPR013087 -
Apr5g1572 447 Gene3D Classic Zinc Finger 85 175 - -
Apr5g1572 447 SUPERFAMILY beta-beta-alpha zinc fingers 50 148 IPR036236 -
Apr5g1572 447 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Apr5g1572 447 MobiDBLite consensus disorder prediction 1 34 - -
Apr5g1572 447 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 19 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1572 Apr-Chr5 19544655 19547831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1572 22 431 IDZ Gene Family AT5G66730 51.293 3.79e-129 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr5g1572 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1572 K25869 - gmx:100818095 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1572 5 19544655 19547831 Apr5g1572 5 19544655 19547831 ECH