Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1563 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCTTACTCCAACAACAACAACAACAACAACAACGATGCAGGCAATTTTGAATGCAACATTTGCTTTGAATTAGCACAGGATCCAATAATCACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAGATGGCTTCACTTTCACTCCCAGTCAAAAGAATGCCCAGTCTGCAAGGCCCTCGTCGAGGAGGAGAAGTTGGTTCCCTTATATGGGAGAGGAAAAACTTCAACTGATCCAAGATCAAAATCTATTCCGGGAGTTAACATCCCGCATCGTCCGGCTGGTCAAAGACCTGAAACTGCTCCTCCGCCTGAATCAAATCATTTTCATCAAGATGGGTTTGGATTTATGGGTGGGTTGGGAGGCTTTGCACCACCGCCAATGGCGTCCGCAAGATTTGGCAATTTCACATTGTCTGCAGCATTTGGTGGTTTTTTACCATCCTTATTCAACTTTCAGTTGCATGGGTTCCATGATGGGATTATGTATGGTGGAGCGGCAGGTTTTCCTCATGGATTTTCCAATTCATTTCATGGTGTCCATGCTCATAGATATCCTCTGCACACACATCAAGGGCAACAAGATTATTTTCTGAAGAAACTGCTTGTGTTTATTGTTTTCTGTGTTGTTCTTGCTTTTATTTGGCAATAG 702 0.4416 MASGFGESTSRSPPSPSYSNNNNNNNNDAGNFECNICFELAQDPIITLCGHLFCWPCLYRWLHFHSQSKECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNHFHQDGFGFMGGLGGFAPPPMASARFGNFTLSAAFGGFLPSLFNFQLHGFHDGIMYGGAAGFPHGFSNSFHGVHAHRYPLHTHQGQQDYFLKKLLVFIVFCVVLAFIWQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1563 233 MobiDBLite consensus disorder prediction 1 24 - -
Apr5g1563 233 PANTHER OS12G0636000 PROTEIN 2 233 - -
Apr5g1563 233 CDD RING-HC_AtRMA_like 32 76 - -
Apr5g1563 233 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Apr5g1563 233 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Apr5g1563 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr5g1563 233 SUPERFAMILY RING/U-box 31 87 - -
Apr5g1563 233 MobiDBLite consensus disorder prediction 88 124 - -
Apr5g1563 233 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 IPR018957 GO:0046872
Apr5g1563 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 88 IPR013083 -
Apr5g1563 233 SMART ring_2 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1563 Apr-Chr5 19462094 19463828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1563 16 216 C3H Transcription Factor Family AT1G19310 68.447 6.35e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1563 K10666 - gmx:100527488 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1563 5 19462094 19463828 Apr5g1563 5 19462094 19463828 ECH