Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1557 ATGATCACAAAACACCCACCTCTCTTCATCTTAGTTGTATTCATAATTCCCTTCCCCATAATCAACACTCAAGTGAACCACCGCGACTGCCACCAAACATGCGGTTCATCCAAACCCTTCCCTTACCCTTTCGGATTTTCCTCCGGCTGCGCCATCCGCCTCAACTGCACCCCTGACGCCGGACCCTCCGTCGGAGAATTCCCCGTCCAAACCGTAACCGCCGACAGCATAATCGTAAACATCAAAGCCCAATGCAATCGCCCATTCGATACCTTCCACCACCTCTTCAGCCACAAATACGCACCCACTTCAGAAAACGTTATCCTCTTTGACAACTGCACAGGCACCCCCTTGCCCTGCTTCATACCCGAGTCTCTCGTCCGCACTCAATTCCAATCCGACGGTTGCAGCGGCTCCGGCGGCGGCAATTTAAGCTGCTACTTCGAAAAGAGCACGAAAGGGTTCGTGAGTGACCGAATACTGGAGCAAATCGAGTGCAAGCACTTTATGTCGTCGATTTCATCCAATAATTTGAGGAACAATTCGGGTGCGGTGTCCTTGGAGGTTGCTACTGTAGAACTTGGATGGTGGCTTCAGGGAGATCAATGTCAATGTTCCGATCATGCCAATTGTACCAAACTTCAATCGCCGGTTGATGGAAAGCCAGGGTTCCGGTGTCGCTGCAACGAAGGGTTCATCGGCGATGGGTTTCTGGCCGGAACAGGTTGCCACAGAGAAACAGCCTCCTCACCATGCAACCCGGCAAAGTACATGTCTGGTCGATGTGGAGGGACAGCGAGATTTGTTGTCTTGATTGGAGGATTTGTTTTTGGTGTTTCACTGATGATTACTCTGGGTTCCTTATGTTGTTTCTTTCGCCGGCGCTCCAAGTTGAGAGTCACAAAGAGCACAAAAAGGCGCTTAACCGAAGCAACTTGCAATTACAGCGTTCCTATCTATCCCTATAAAGACGTCGAGAGAGCCACGAATGGCTTCTCAGAGAAACAACGACTCGGAACTGGGGCATACGGGACAGTTTATGCTGGAAAACTTCACAACGACGAATGGGTTGCCATCAAAAGGATAAAACATAGAGATACCGACAGCATTGAGCAAGTAATGAATGAGATAAAGCTCCTTTCCTCAGTTAGCCACACCAATTTAGTTCGCTTGTTGGGTTGTTCCATTGACTACGGAGAACAAATCCTGGTCTATGAGTTCATGCCCAATGGAACACTAAGTCAGCATTTACAGGGGGAGAGAGGGAGTGGACTTTCATGGCCAGTTCGACTCACAATTGCCACTGAAACAGCACAAGCCATAGCACATCTTCATTCGGCCCTTAATCCTCCCATTTACCACAGAGATATCAAGTCAAGTAACATACTTTTGGACTACAATTTTGGATCTAAAGTAGCAGATTTTGGTCTTTCTAGACTTGGGATGACCGAAATATCCCACATTTCAACTGCTCCACAGGGCACCCCTGGCTACGTTGATCCACAGTACCATCAAGACTTTCACCTTTCTGATAAGAGTGATGTGTATAGCTTCGGTGTTGTTCTTGTTGAGATCATAACGGGACTCAAAGTGGTGGACTTTTCTCGTCCTCACAATGAAGTCAACCTTGCTTCTCTTGCTGCAGACAGGATCGGGAAAGGGCTTTTGGATGAGATCATAGACCCATTCCTTGAGCCCGAAGCGAGTAATGATGCTTGGACCCTCTCTTCCATACACAAGGTTGCTGAGCTGGCATTCAGATGCCTTGCGTTCCACAGAGATATGAGGCCTTCCATGACAGAAGTGGCTTCTGAGCTTGAACAACTTAGGTTGAGTAAGTGGACAACATTCGGAGACAACAATTGTATAACTTCCACCGAGTTGTCCTCTTGTTCTTCCTCCTCAAATGAAAGTGAGAAACCACTAAGCACCACAATGACCAAGGTTGGGCCAAAGGGTAAAGACCATCTCTATCTCCAAAATGGGCCCATTACTTTGAAGCCTATACAAAAGCCTAATAGTAATTCGCCGGTCTCGGTTCAAGACCAAGACCTGTGGTTGAGTGAACAGAGCTCACCTTCGTCAAATAGTTTTCCCAGTAAGACCTTTGATTGA 2115 0.4766 MITKHPPLFILVVFIIPFPIINTQVNHRDCHQTCGSSKPFPYPFGFSSGCAIRLNCTPDAGPSVGEFPVQTVTADSIIVNIKAQCNRPFDTFHHLFSHKYAPTSENVILFDNCTGTPLPCFIPESLVRTQFQSDGCSGSGGGNLSCYFEKSTKGFVSDRILEQIECKHFMSSISSNNLRNNSGAVSLEVATVELGWWLQGDQCQCSDHANCTKLQSPVDGKPGFRCRCNEGFIGDGFLAGTGCHRETASSPCNPAKYMSGRCGGTARFVVLIGGFVFGVSLMITLGSLCCFFRRRSKLRVTKSTKRRLTEATCNYSVPIYPYKDVERATNGFSEKQRLGTGAYGTVYAGKLHNDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIDYGEQILVYEFMPNGTLSQHLQGERGSGLSWPVRLTIATETAQAIAHLHSALNPPIYHRDIKSSNILLDYNFGSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPHNEVNLASLAADRIGKGLLDEIIDPFLEPEASNDAWTLSSIHKVAELAFRCLAFHRDMRPSMTEVASELEQLRLSKWTTFGDNNCITSTELSSCSSSSNESEKPLSTTMTKVGPKGKDHLYLQNGPITLKPIQKPNSNSPVSVQDQDLWLSEQSSPSSNSFPSKTFD* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1557 704 Pfam Protein kinase domain 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1557 704 SMART serkin_6 332 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1557 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Apr5g1557 704 ProSiteProfiles Protein kinase domain profile. 332 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1557 704 Gene3D Laminin 202 238 - -
Apr5g1557 704 SUPERFAMILY Protein kinase-like (PK-like) 308 607 IPR011009 -
Apr5g1557 704 MobiDBLite consensus disorder prediction 627 704 - -
Apr5g1557 704 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 23 659 - -
Apr5g1557 704 Gene3D Transferase(Phosphotransferase) domain 1 408 625 - -
Apr5g1557 704 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Apr5g1557 704 CDD STKc_IRAK 338 609 - -
Apr5g1557 704 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Apr5g1557 704 MobiDBLite consensus disorder prediction 627 645 - -
Apr5g1557 704 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 659 IPR045274 GO:0007166
Apr5g1557 704 MobiDBLite consensus disorder prediction 666 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1557 Apr-Chr5 19402726 19408340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1557 1 698 Receptor kinase-like Gene Family AT2G23450 51.541 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Apr5g1557 Pkinase 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1557 - - gmx:100777480 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1557 5 19402726 19408340 Apr5g1557 5 19402726 19408340 ECH