Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1549 ATGCGGGCCTCGGGCTGCTTCTTGTTACTTTCATTATTTCTCTTCTCATCCTCATTTTCTTATGCACTTTCCAATGTTGAAGCCGCTTTCATTGCTCGTCGCCAATTGTTACACCTTCGTGAGAACAATGATTTACCCGACAACTATGCAGATAACTACGTTACAGATCTAACTTTCTCCAACTCAAGAGTCAAAAGTGCATACATTGCATTTGAAGCATGGAAAAAGGCAATCTATTCAGACCCAACAAACTTCACAGGAAATTGGGTTGGCCCAGATGTTTGCTCTTATAATGGAGTTTTCTGTGCTGAGGCTCTTGATGATTCTAAGATTGAGGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTATATTCCTCCCGAGTTCGGTTTGTTAACTGACCTTGCTCTTTTGCATATAAACTCAAATAGGTTTTGTGGTATTCTCCCAAAAAGCTTTTCCAAGCTAAAGCTTTTGCACGAGCTAGATATTAGCAACAACCGTTTTGTTGGCAAATTCCCTACACATATCCTTTCAATCCCAGATATCAAATACCTTGATCTTAGGTACAATGACTTCGAAGGGGAATTGCCTTATGAGCTTTTCAACAAAACACTTGATGCTATCTTTTTGAACAATAATCGATTCACTTCCACAATTCCCGAGAATCTTGGCTCTTCTACAGCCTCTGTTGTGGTTTTGGCCCATAACCATCTTTCTGGGTGTGTTCCTTCAAGCATTGGTGACATGAAAAAGACATTGAACGAGTTTGTTTTGATCAACAACAAAATTACCGGTTGCTTGCCCGAAGACATTGGAAAGCTTCACGAAGTTTCTGTCTTTGACGTAAGCCAAAACCTTTTTGTTGGCGTGTTGCCTAGGACCTTGAAGGAACTCAAAAAGGTGGAACAATTGTCCATTGCACATAACAAGCTCACAGGTTTTGTGCCACGTGGTGTTTGTAGCTTGCCTAGCTTGGTCAATTTCACGTTCTCAGATAACTATTTCAATGGTGAGGAAGAAGGTTGTGTGCCTCCTAGAAAGGAAATAGAATTGGATGATGAGAGCAACTGCATACCAGACAGGCCAAAGCAGAAGAGTGCAAATGCATGCAATGATGTGATAAGCAAGCCTGTAGATTGTAGCAAGGCACAATGTGGCAGTGGCAACCCATCTCATCATTCCAATCCTCCAACTGAGAAGTCAACACCATCTCCATCTACACCAAAATCTAACCCTATTCCCTCCAATCCTCCTACTCACAAACAAACACCATCTCCATCTACACCAAAACCTACCCCTTCTCCCACTGAGAAGCCATCACCGAAGCCACAACCTCAACCTACCCCTTCTCCCCCAACTCATGAACAGCCAACACCAAAGCCCCAACCCCAACCTACCCCTTCTCCCTCTAACCCTTCACATGAGAAGCAAACACCCCCAGATGATGATCCTCATAGGGAATCACCTAAGCGAAGACAAAGGCCTCCACACTCTCCACCACCACCTGTCCACTCTCCACCGCCACCTGTCCATTCTCCTCCTCCACCAGTTCACTCCCCACCGCCACCTGTCCAGTCTCCCCCTCCACCAGTCCACTCCCCACCACCCCGTATCCACTCTCCCCCTCCACCAGTTCACTCCCCACCACCCCCTGTCCACTCTCCTCCACCTCCACCTGTTCACTCCCCACCACCACCAATAGTACATTCCCCTCCTCCACCGGTTTACCCTCCACCACCAGTTCACTCTCCTCCACCCCCAGTCCATTCTCCACCACCACCCGTATACTCTCCTCCACCACCCGTCCATTCTCCACCACCACCTGTATACTCTCCTCCACCACCAGTCCATTCTCCACCGCCACCCGTATTCTCTCCTCCACCACCAGTTTACTCTCCACCACCCCCACCAGTTTACTCCCCTCCACCACCGGTTCATTCTCCACCACCAACAGTTCATTCCCCTCCACCACCACCTGTCTACTCTCCACCGCCGCCGGTCCACTCTCCACCACCCCCAACATCATCGGTTTCAGCTCCTCCTCCAGAAGAAGACGTCATTCTTCCCCCTCACTTTGGCTCTTCTTATGCTTCGCCCCCTCCACCTGTCATCAGCGGCTACTAA 2136 0.4822 MRASGCFLLLSLFLFSSSFSYALSNVEAAFIARRQLLHLRENNDLPDNYADNYVTDLTFSNSRVKSAYIAFEAWKKAIYSDPTNFTGNWVGPDVCSYNGVFCAEALDDSKIEVVAGIDLNHADIAGYIPPEFGLLTDLALLHINSNRFCGILPKSFSKLKLLHELDISNNRFVGKFPTHILSIPDIKYLDLRYNDFEGELPYELFNKTLDAIFLNNNRFTSTIPENLGSSTASVVVLAHNHLSGCVPSSIGDMKKTLNEFVLINNKITGCLPEDIGKLHEVSVFDVSQNLFVGVLPRTLKELKKVEQLSIAHNKLTGFVPRGVCSLPSLVNFTFSDNYFNGEEEGCVPPRKEIELDDESNCIPDRPKQKSANACNDVISKPVDCSKAQCGSGNPSHHSNPPTEKSTPSPSTPKSNPIPSNPPTHKQTPSPSTPKPTPSPTEKPSPKPQPQPTPSPPTHEQPTPKPQPQPTPSPSNPSHEKQTPPDDDPHRESPKRRQRPPHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPRIHSPPPPVHSPPPPVHSPPPPPVHSPPPPIVHSPPPPVYPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVFSPPPPVYSPPPPPVYSPPPPVHSPPPTVHSPPPPPVYSPPPPVHSPPPPTSSVSAPPPEEDVILPPHFGSSYASPPPPVISGY* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1549 711 PRINTS Proline rich extensin signature 406 418 - -
Apr5g1549 711 PRINTS Proline rich extensin signature 421 437 - -
Apr5g1549 711 PRINTS Proline rich extensin signature 444 456 - -
Apr5g1549 711 PRINTS Proline rich extensin signature 456 477 - -
Apr5g1549 711 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 585 - -
Apr5g1549 711 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 562 706 - -
Apr5g1549 711 MobiDBLite consensus disorder prediction 405 478 - -
Apr5g1549 711 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Apr5g1549 711 Gene3D Ribonuclease Inhibitor 68 357 IPR032675 -
Apr5g1549 711 MobiDBLite consensus disorder prediction 386 404 - -
Apr5g1549 711 MobiDBLite consensus disorder prediction 480 498 - -
Apr5g1549 711 MobiDBLite consensus disorder prediction 385 711 - -
Apr5g1549 711 MobiDBLite consensus disorder prediction 499 691 - -
Apr5g1549 711 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 562 706 - -
Apr5g1549 711 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 585 - -
Apr5g1549 711 SUPERFAMILY L domain-like 76 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1549 Apr-Chr5 19344970 19347174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1549 5 558 Trihelix Transcription Factor Family AT3G19020 52.557 5.53e-180 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1549 - - gmx:100780677 631.713