Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g1548 | ATGGCAATTCGTGTAACCTTTTCCTTCTCCGGCTATGTCGCCCAAAATCTCGTTTCCTCCGCCGGCGTCCGGGTCGCCAATTCTCGTTGCGTCCAAGAATGCTGGATCCGCTCTCGCATCTTCGGAATTAACCAGAAACACGACTTAGATTCCTCCCCCAAGCCCAATTGCTGGCCCAACACCTCTGCTTGCGCCTACTCCACCCTCACCGGAGATATTATCGGCGACGGCTGCAAGAACCCGATCATCTTGGGCTTGATTTCGTTGATGAAGTCAACGGTTGGCGTTTCTGGGTCATCCGCGGCGGCTATGGGTATTTTGGGTATTTCGCCCTTCAAAACAACTTCCATCATGCCCTTTTTGCAGGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCTGACCCTACCACGTGGGAGGTGGACAAAGGAGGCACGCGCCGCGTTGTTGCGAGTGTGGAACCGAATTTCAACCCCAATGATTTTGAGAAGACTAGTTGGCTTTCGCGGTTGATGAACGTTTGTTCCGAAGATGCGAAAGCTGCGTTCACCGCTGTTACCGTTAGTTTGCTATTCAAGTCTTTCTTGGCTGAACCTAGATCCATTCCCTCTGCTTCTATGTACCCTACTCTTGAAGTGGGTGACCGTGTTCTAACGGAGAAGGTTTCTTTCTTCTTTAGAAAGCCTGATGTTTCTGATATTGTGATTTTTAAAGCGCCTCCTAGTTTGCAGGAATTTGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGATTGTAGCTAAGGCTGGGGACACTGTTGAAGTTCGTGGTGGGAAACTACTAGTGAATGGTGCTGGTGAAGAAGAGGAATTTGTTTTAGAGCCTCTTGCATATGAGATGGATCCAGTGGTTGTGCCCGAAGGATATGTTTTTGTAATGGGAGACAATCGTAATAACAGCTTTGATTCTCATAACTGGGGTCCCCTCCCAATTGAGAACATTGTTGGTAGATCCATGTTTCGGTACTGGCCTCCATCCAAGGTATCTGACATTGATACCCCTCGTAAACTCCCATCTGGAAACAGTCCTGTGGCAATTTCTTGA | 1083 | 0.4792 | MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRSRIFGINQKHDLDSSPKPNCWPNTSACAYSTLTGDIIGDGCKNPIILGLISLMKSTVGVSGSSAAAMGILGISPFKTTSIMPFLQGSKWLPCNESIPDPTTWEVDKGGTRRVVASVEPNFNPNDFEKTSWLSRLMNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSASMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPSLQEFGFSSSDVFIKRIVAKAGDTVEVRGGKLLVNGAGEEEEFVLEPLAYEMDPVVVPEGYVFVMGDNRNNSFDSHNWGPLPIENIVGRSMFRYWPPSKVSDIDTPRKLPSGNSPVAIS* | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g1548 | 360 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 195 | 211 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Apr5g1548 | 360 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 254 | 266 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Apr5g1548 | 360 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 298 | 317 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Apr5g1548 | 360 | ProSitePatterns | Signal peptidases I serine active site. | 204 | 211 | IPR019756 | GO:0004252|GO:0016021 | |
| Apr5g1548 | 360 | SUPERFAMILY | LexA/Signal peptidase | 194 | 343 | IPR036286 | - | |
| Apr5g1548 | 360 | Pfam | Signal peptidase, peptidase S26 | 179 | 336 | IPR019533 | GO:0004252|GO:0006465 | |
| Apr5g1548 | 360 | PANTHER | SIGNAL PEPTIDASE I | 1 | 345 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Apr5g1548 | 360 | TIGRFAM | sigpep_I_bact: signal peptidase I | 182 | 337 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Apr5g1548 | 360 | CDD | S26_SPase_I | 198 | 330 | IPR019533 | GO:0004252|GO:0006465 | |
| Apr5g1548 | 360 | ProSitePatterns | Signal peptidases I signature 3. | 303 | 316 | IPR019758 | GO:0004252|GO:0016021 | |
| Apr5g1548 | 360 | Gene3D | Umud Fragment, subunit A | 192 | 348 | - | - | |
| Apr5g1548 | 360 | PANTHER | THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED | 1 | 345 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g1548 | Apr-Chr5 | 19338310 | 19340599 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr5g1548 | 207 | 337 | MADS-box Gene Family | AT1G29960 | 33.083 | 1.23e-13 | 65.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g1548 | K03100 | - | gmx:100817525 | 598.586 |
Event-related genes