Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1541 ATGGAAGCAATGAACAGAAGCTCCTCCTCCACTGCGTCTTCCTCCGACTCTTCCTCTTCCGACTCCAATCAGAGGAATCCCAACAAACCCGACCGAATCAAAGGCCCGTGGAGCGCCGAAGAGGATCGGATCCTCACCCGACTCGTCGAGCGATACGGACCCAGAAACTGGTCCTTGATCAGCCGCTACATAAAGGGCAGGTCCGGCAAGTCCTGCCGGCTACGGTGGTGCAACCAGCTCAGCCCCACCGTGGAGCACCGTCCCTTCTCAGCGCAAGAGGACGAGACCATCATAGCGGCGCATGCACAGTACGGTAACCGGTGGGCCACCATTGCCCGGTTACTACCGGGTCGAACCGATAACGCCGTGAAGAACCATTGGAACTCCACGCTCAAGCGCAGACCCAAGGGTGGCTCTCTTATTGTAAATCCCAACGACGGAGGCGCTTCTTCTTCTACTCCTTGCCCCTTGGAAGACGACCCGTTGACCGCGTTGACTCTGGCTCCCCCCGGGGTTCGTAACGGTGGTGTGGTCGAGGAGGCCGTGGCCGACCACCGACCCTCGCCGGAGAATGTGCCGACGGGGTTTTGGGATATGATGAGAGATGTGATTGCGAGGGAAGTGAGGGAATATGTGTCGTCTAATTTTTCTGACAACTCGGGTTTTCATTGA 672 0.5774 MEAMNRSSSSTASSSDSSSSDSNQRNPNKPDRIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSAQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRPKGGSLIVNPNDGGASSSTPCPLEDDPLTALTLAPPGVRNGGVVEEAVADHRPSPENVPTGFWDMMRDVIAREVREYVSSNFSDNSGFH* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1541 223 Gene3D - 33 85 - -
Apr5g1541 223 SMART sant 85 133 IPR001005 -
Apr5g1541 223 SMART sant 33 82 IPR001005 -
Apr5g1541 223 PANTHER MYB TRANSCRIPTION FACTOR 2 209 - -
Apr5g1541 223 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Apr5g1541 223 CDD SANT 88 131 IPR001005 -
Apr5g1541 223 MobiDBLite consensus disorder prediction 1 38 - -
Apr5g1541 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Apr5g1541 223 Pfam Myb-like DNA-binding domain 37 95 - -
Apr5g1541 223 Gene3D - 88 134 - -
Apr5g1541 223 PANTHER MYB PROTEIN-RELATED 2 209 - -
Apr5g1541 223 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Apr5g1541 223 MobiDBLite consensus disorder prediction 1 26 - -
Apr5g1541 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Apr5g1541 223 CDD SANT 36 78 IPR001005 -
Apr5g1541 223 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1541 Apr-Chr5 19295968 19297211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1541 31 141 MYB Transcription Factor Family AT3G50060 76.577 3.49e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1541 Myb_DNA-bind_6 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1541 - - gmx:778051 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1541 5 19295968 19297211 Apr5g1541 5 19295968 19297211 ECH