Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1528 ATGGTGGCAACATACGAGGAGAGTCGGAGGAAGAGATTGGAAGAGAACAGGAAGAGAATGGAAGCCCTCAATCTGCCCCATCTTTCTCAAGCTCTTCACAACTCACTTTCTCCCAAATCCTCTCCGTCGAAGCACCCCAAATCTCGCACACTCCACAGAGAGGTTGTTGTGGTAAGAAGGTCCAGTCGTGTTGCCAACATGCCCATTCCCGTTTACAAAGAAGTCGTTATTGATCGCGTCACGATACCCAGAAGAAGTTACAATAGGCATAGGGATTTTTCGAATCGGGTGTATGCTTCAGAAGAAGCCAGAGAGGAAGCTCTGGAGAAAGCAGATGAGTTATTGTCGGAATTACAATCTGAATATCCAACCTTCATAAAGTCAATGCTTCAGTCCCACGTCAGCGGGGGATTCTGGCTGGGCCTTCCGGTCCAGTTCTGCAAGGCAAATCTTCCAAAAGGGGACGAAGTGTTTACTTTGATTGATGAAGATGGGAATGAGTATCCAACAATATATTTGGCCCGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCTGTTGCTCATAACCTGGCTGATGGGGACGCTTTGATCTTTCAATTGATTAAGCGCACCACATTCAAGGTGTACATTGTTAGAGTGAATAGTCCTCCAGAGGGTGAACAGCTTAAATGA 678 0.4617 MVATYEESRRKRLEENRKRMEALNLPHLSQALHNSLSPKSSPSKHPKSRTLHREVVVVRRSSRVANMPIPVYKEVVIDRVTIPRRSYNRHRDFSNRVYASEEAREEALEKADELLSELQSEYPTFIKSMLQSHVSGGFWLGLPVQFCKANLPKGDEVFTLIDEDGNEYPTIYLARKTGLSGGWKGFAVAHNLADGDALIFQLIKRTTFKVYIVRVNSPPEGEQLK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1528 225 CDD B3_DNA 123 214 IPR003340 GO:0003677
Apr5g1528 225 SMART B3_2 125 216 IPR003340 GO:0003677
Apr5g1528 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 218 IPR044837 -
Apr5g1528 225 ProSiteProfiles B3 DNA-binding domain profile. 125 216 IPR003340 GO:0003677
Apr5g1528 225 Pfam B3 DNA binding domain 125 214 IPR003340 GO:0003677
Apr5g1528 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN 3 218 - -
Apr5g1528 225 MobiDBLite consensus disorder prediction 32 51 - -
Apr5g1528 225 SUPERFAMILY DNA-binding pseudobarrel domain 118 216 IPR015300 -
Apr5g1528 225 Coils Coil 101 121 - -
Apr5g1528 225 Gene3D - 99 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1528 Apr-Chr5 19194189 19195904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1528 55 220 B3 DNA Binding Superfamily AT5G42700 62.651 4.34e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr5g1528 B3 7.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1528 - - gmx:100797091 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1528 5 19194189 19195904 Apr5g1528 5 19194189 19195904 ECH