Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1513 ATGACGATGATGACGCAGCTTCCTGAATTTTCAGCAGCTTACGGTGACATAAACACCTCGGAAATTCTTCCACCTCCGGAGGAGTTCTACTGTAATAATATACGCAGCACCATGCCACTAGCAGATTTAATTGATAACCCTCCTAGTTCCATGCCTTGGCCCTCATTCACACACTTACCATCTACATCCAACGCAATCTCTTTTAACCCTACCCCAATAGCGCTTCAAGAACAAGGTCAAGAACAAACCCCAAGAAACGAAGATAAGCGAAACTCGATGGCGGCGATGAGGGAGATGATATTCAGGATTGCAGCCATGCAGCCAATACACATAGACCCAGAGTCGGTGAAACCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGACCCTCAGAGCGTTGCGGCAAGGCACCGCAGAGAGAGAATCAGCGAGAGAATAAGGATACTGCAGAGATTGGTCCCTGGAGGGACTAAGATGGACACTGCGTCTATGTTAGATGAAGCTATTCATTACGTTAAGTTTCTCAAAACCCAGGTTCAGTCTCTCGAACGAGCTTCCGTTAACAACACTAGCCTACTTGCTGCTAATTCGGGAATAGGGTTCCCTGTTGCTATGTCTACTAGGACTCCTCCCACGGCCACCCCTTATTTTCCTCCACCTAAACCTTACCAACCTCGGAATGTTGAGCGTTATGGAGATGCATGA 705 0.4752 MTMMTQLPEFSAAYGDINTSEILPPPEEFYCNNIRSTMPLADLIDNPPSSMPWPSFTHLPSTSNAISFNPTPIALQEQGQEQTPRNEDKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASVNNTSLLAANSGIGFPVAMSTRTPPTATPYFPPPKPYQPRNVERYGDA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1513 234 MobiDBLite consensus disorder prediction 210 234 - -
Apr5g1513 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 184 IPR036638 GO:0046983
Apr5g1513 234 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 209 - -
Apr5g1513 234 SMART finulus 132 181 IPR011598 GO:0046983
Apr5g1513 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 209 IPR045843 GO:0003700|GO:0006355
Apr5g1513 234 Pfam Helix-loop-helix DNA-binding domain 135 175 IPR011598 GO:0046983
Apr5g1513 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Apr5g1513 234 Gene3D - 125 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1513 Apr-Chr5 19093449 19094153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1513 29 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 61.176 4.83e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g1513 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1513 - - gmx:100815041 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1513 5 19093449 19094153 Apr5g1513 5 19093449 19094153 ECH