Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1500 ATGGAAGAAGAAAGAGATTGTTGTTCCACCAATTCGTCCATCACCAAGAGAAAGCATCATCAGCAACAGCAGCAGCAACACCAAGACAATCCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCCGAGATTAGAGAACCCAACAAAAGATCAAGGATTTGGTTGGGCTCTTACACCACCCCTGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCTTCGGCTCGTCTCAACTTTCCCGATTTGTTGTTCCAAGACGACGACGTTTCCACCCAACACGGCGACATGTCCGCCGATTCAATTCGCAAGAAAGCCACTCAAGTCGGCGCCAGAGTCGACGCTCTTCAAACCGCTCTTCAGTCCTCCTCTCACAACCCTTCCACTCACGTCACCTCCGACAAACCAGATTTAAACGAGTATCCAAAGCCCGAAGATTGA 462 0.5216 MEEERDCCSTNSSITKRKHHQQQQQQHQDNPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPDLLFQDDDVSTQHGDMSADSIRKKATQVGARVDALQTALQSSSHNPSTHVTSDKPDLNEYPKPED* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1500 153 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 MobiDBLite consensus disorder prediction 14 31 - -
Apr5g1500 153 MobiDBLite consensus disorder prediction 125 142 - -
Apr5g1500 153 MobiDBLite consensus disorder prediction 1 33 - -
Apr5g1500 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 153 - -
Apr5g1500 153 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Apr5g1500 153 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Apr5g1500 153 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Apr5g1500 153 MobiDBLite consensus disorder prediction 125 153 - -
Apr5g1500 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1500 Apr-Chr5 18974765 18976460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1500 26 132 AP2-EREBP Transcription Factor Family AT5G67190 71.171 3.42e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr5g1500 AP2 2.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1500 K09286 - gmx:100801528 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1500 5 18974765 18976460 Apr5g1500 5 18974765 18976460 ECH