Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1481 ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGGCAAGTCACTTTCTCAAAGAGGAGGAATGGACTAATCAAGAAAGCTTACGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCAGGGAGAGCCAGTCTCTTCTCTGGCAATAGAAGTATTGAGGAAATTCTAGAACGATATGTTAATCTTCCGGAGACTGAACACGGAAGGATGCACAATCAAGAGCACGTTAAAAAGTTGCTCACTAGGTTGAAAATTGAAGCTGATCAAATATGCAAAGCCCCACGCCCAATGACTCCAGATTCTCAACTTGAGGAGATTCAAAGAGAAATATCTATTTGCAAGTCTCAATTGGAAGAGATGGAGAAGAGACTAAGGATATTTGAAGGTGATCCTTCTGAGATCACAACGTTGTGCGAGGCTGAATATCGTGAACATGTTCTTCGGGAAACACTAACACAAGTGCAACTACAAAAAGTACATGTTCCAAAAACTGTAAATGAAAATGGATTTGTTACCAGTACCTCAAAGAATCCAGTAGATTGGTTTTCACAGGGAGATCCACGTCCTCAGATTTTGAACTTTGCTAATGCTTACGACTCTGCTCCTGTAAGAGATCAACAATCAAACAATAATGCTGTTGTTGATATGTTAGCGCCAAATTCGACCCTTCTGCACTCTTGGGAGCACCTTCGTCCTTTAGGGAGTGGATCTTTATCTATTGCAGAGACAACTCAGACAAGGGAAGGAGAACAACTAGAACAGTATTTTTCTCAATTTATCCCATAA 819 0.4054 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRASLFSGNRSIEEILERYVNLPETEHGRMHNQEHVKKLLTRLKIEADQICKAPRPMTPDSQLEEIQREISICKSQLEEMEKRLRIFEGDPSEITTLCEAEYREHVLRETLTQVQLQKVHVPKTVNENGFVTSTSKNPVDWFSQGDPRPQILNFANAYDSAPVRDQQSNNNAVVDMLAPNSTLLHSWEHLRPLGSGSLSIAETTQTREGEQLEQYFSQFIP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1481 272 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Apr5g1481 272 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr5g1481 272 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr5g1481 272 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr5g1481 272 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr5g1481 272 Coils Coil 114 134 - -
Apr5g1481 272 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Apr5g1481 272 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Apr5g1481 272 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 240 - -
Apr5g1481 272 PANTHER MADS BOX PROTEIN 1 240 - -
Apr5g1481 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Apr5g1481 272 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1481 Apr-Chr5 18804286 18807724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1481 1 172 Type I MADS-box Gene Family AT1G22130 48.913 5.66e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr5g1481 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1481 - - mtr:MTR_3g102570 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1481 5 18804286 18807724 Apr5g1481 5 18804286 18807724 ECH