LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1479	ATGAGTGCTCCGTCGCGAGAAGAGGAGTCGAAAGAGGACGAGGAGGAGAACCGGCTACTGGAAGGGCAACCGGAGGAGGAAGAGGTAGCCTACGAAGCGGGGGAGAAGATCCTGGTGGTGGATTTCGAGTTTGATTCGGTGGACGATTCGAGCGTGCCTCCTTTCTCATGGAAGAAGCTGTGGATGTTCACTGGGCCTGGGTTCTTGATGAGCATAGCGTTTTTGGATCCAGGGAATCTTGAAGGGGATCTACAAGCTGGAGCCATCGCGGGCTACTCACTTCTCTGGCTGCTAATGTGGGCCACCTTCATGGGCCTCTTGATCCAGCTTCTGTCTGCCAGAGTTGGTGTCGCCACGGGCCGCCACCTCGCCGAGCTTTGCAGGGACGAGTATCCCAATTGGGCTCGCCTCGTGCTTTGGTTCATGGCCGAGCTGGCCCTGATTGGTGCTGATATTCAAGAGGTTATTGGAAGTGCCATTGCCATCCAAATTCTTAGCCGTGGCTTTCTCCCTCTCTGGGCTGGAGTTCTAATTACTGCTTCTGATTGCTTTGTTTTTCTGTTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATCGCTACCATGGCTCTTTCTTTTGCTTGGATGTTTGGTGACGCAAAACCTAGTGGGAAAGAACTTTTAATGGGTATTTTGGTTCCGAGACTAAGCTCGAAAACAATTCGTCAGGCTGTGGGTGTTGTGGGTTGTGTCATTATGCCTCACAATGTTTTCTTGCATTCGGCTTTGGTGCAGTCAAGGAAGATTGATCCCAATAAGAAAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATTGAGTCATCGGCTGCGCTTTTGGTCTCTTTCATGATCAATCTATTTGTCACAACCGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAGTAGCATAGGATTGGTGAATGCAGGACAGTATCTTGAAGAAAAGTATGGAGGAGGACTCTTCCCTATTCTTTATATATGGGGAATTGGGTTGTTGGCAGCAGGGCAGAGTAGCACCATCACTGGCACGTATGCTGGGCAATTCATAATGGGAGGTTTCCTCAACCTTCGTTTGAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCCGAAGCCTCATTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACATTGGTGTCAAAAGAGCAGATCATGGGGACCTTTAGGGTTGGCCCTGTTCTTGAGAGAGTGGCGTGGACTGTTGCTGGACTGATAATAGTAATTAATGGGTATCTCTTATTAGATTTCTTCCTTTCTGAGGTGAATGGCCTGCTGCTTGGCCTTGTAGCTTGCTCCTGCACAGCAGCCTATGTTGCATTCATTGTATATTTGGTTTCACAGAGCGGTGCTCTTCCTTCTGCTTGGGTTAATCGCCTTCCCAAGGGATTTTCTTTTACTGGGAATTAA	1560	0.4756	MSAPSREEESKEDEEENRLLEGQPEEEEVAYEAGEKILVVDFEFDSVDDSSVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVLITASDCFVFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDAKPSGKELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPNKKGRVQEALNYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQASSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQIMGTFRVGPVLERVAWTVAGLIIVINGYLLLDFFLSEVNGLLLGLVACSCTAAYVAFIVYLVSQSGALPSAWVNRLPKGFSFTGN*	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1479	519	Pfam	Natural resistance-associated macrophage protein	81	442	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	21	508	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	Hamap	Divalent metal cation transporter MntH [mntH].	46	468	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	139	165	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	169	188	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	194	215	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	243	266	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	350	369	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	378	395	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PRINTS	Natural resistance-associated macrophage protein signature	412	431	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	PANTHER	BNAC08G04640D PROTEIN	21	508	-	-
	Apr5g1479	519	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	58	436	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr5g1479	519	MobiDBLite	consensus disorder prediction	1	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1479	Apr-Chr5	18793527	18797252	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g1479	7	499	Inorganic Solute Cotransporters	AT1G47240	80.709	0.0	823

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1479	K21398		-	gmx:100791117	910.598

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1479	5	18793527	18797252	Apr5g1479	5	18793527	18797252	ECH