Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1468 ATGATGAGCTGCAACGGTTGCAGAGTCCTCCGCAAAGGGTGCAGCGAAAGGTGCATCCTGAGGTCATGCCTGCAGTGGATCCAATCCCCTCAAGCACAAGCCCATGCAACTCTCTTCCTCGCTAAGTTCTTCGGACGCACCGACCTTATGTCTTTCATTTCCTCCGTTCCCTTTAACAAGAGAACCGCGCTGTTTCAGTCTCTACTGTTTGAAGCGTGCGGACGAACAGTTAATCCCGTCAACGGTGCTGTTGGACTTCTATGGAGCGGTAACTGGCACGTGTGCCAGGCTGCCGTCGACACCGTGCTCTCCGGAGGCGTTATCCGGCCGTTACCGGAGTTTGCGGCCCCGATCTTCGGCGAATCGGATCAAGAGTGTTGCTACAACAGCACAAGTTCAAAGAGAGGCAGCGATGATATCATTAGCGACAATGAGAAAAAGCTTTTGAATCTTTTCGTGTGA 462 0.526 MMSCNGCRVLRKGCSERCILRSCLQWIQSPQAQAHATLFLAKFFGRTDLMSFISSVPFNKRTALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQAAVDTVLSGGVIRPLPEFAAPIFGESDQECCYNSTSSKRGSDDIISDNEKKLLNLFV* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1468 153 Pfam Lateral organ boundaries (LOB) domain 3 101 IPR004883 -
Apr5g1468 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 2 130 - -
Apr5g1468 153 ProSiteProfiles LOB domain profile. 2 108 IPR004883 -
Apr5g1468 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1468 Apr-Chr5 18716020 18716584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1468 2 126 AS2 family AT3G49940 67.910 6.33e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr5g1468 LOB 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1468 - - aprc:113865980 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1468 5 18716020 18716584 Apr3g0069 3 1199966 1201269 ECH
Apr5g1468 5 18716020 18716584 Apr7g0845 7 15489923 15491233 ECH
Apr5g1468 5 18716020 18716584 Apr8g2418 8 34374240 34375604 ECH
Apr5g1468 5 18716020 18716584 Apr7g0007 7 775114 775837 ECH
Apr5g1468 5 18716020 18716584 Apr5g1468 5 18716020 18716584 ECH