Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1465 ATGGAAACTCTTGGAGCCTTCCCTGATGAAGAATGGGAATGCTATGGCAGAATGTTTGCCATTGAAAACCATTATGACTTGCCACAATTACTTGGTCAAAGCTCACTATTGCTCGGGGAAGATGATGGGAACAGTGGAATGCAATTTTGCTCCACTCATGAAGCTGGGGGAATTAAGAGCATGTTTTACTCTCTTGATTCTCACAACTCTAATTTTCAGTATTTATCTCAAGAAGGTAGTCACGGGAGGAATTGTAGTGATCATACTCTCTTTGTGGCCAATCCGGGTCATACAAATTACTGTTTTGATTACCCGGATAATGTGCTAGCAAATACAAATACATCTATTGGTTTTTGCATGATGGATAAGAAAAGGCCAGGCTCATTTGTAGAATTACACACTGACGTCGTAATGAAAGAGAATGTCAACTTAAATGAAGAAGAGAAAAGTGACAGATCAAAGAATTATGATCAGACTCAAGTCAAGCCTAATGTTTTTCCCACCAAGCTATCGAAGCACAAAAGGATGCTTGATGTGCCAGAATTGGTAGAAGATAAAACAAACTCATGCGGGAATAGTAAGAAAAAACCTTGCATTTCGAAAGAGGTGCAAAGATGCATGAAGACTGCACGGTCCATGAAGAACCAGAAGCTTGATAGAAAAGGGAACGAGGCAGAAGAGACTAATGTAGGTTCAGATGGATATAGCTCTAGTAGCTATGCTTCGGAGGAGGATAACACTTCTCAAGAAAATAGTGTAGGAGCTACTTCGGCATCTAAATCATCACCTACTGTTATAAACTTAAATGGTAAGAGAAGAGCCAGCAGGGGAACAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAGCGAATCAATGAGAGACTAAAAATTCTACAAAATCTTGTACCCAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTTCATTACGTGAAATTTTTGCAGCTTCAGATCAAGCTTCTAAGCTCTGATGATTTATGGATGTACGCTCCGATTGCTTATAATGGACTTGACATTGGACTCAATCTAAGCCGGAAGATTTCTCCACCTCTATGA 1095 0.4 METLGAFPDEEWECYGRMFAIENHYDLPQLLGQSSLLLGEDDGNSGMQFCSTHEAGGIKSMFYSLDSHNSNFQYLSQEGSHGRNCSDHTLFVANPGHTNYCFDYPDNVLANTNTSIGFCMMDKKRPGSFVELHTDVVMKENVNLNEEEKSDRSKNYDQTQVKPNVFPTKLSKHKRMLDVPELVEDKTNSCGNSKKKPCISKEVQRCMKTARSMKNQKLDRKGNEAEETNVGSDGYSSSSYASEEDNTSQENSVGATSASKSSPTVINLNGKRRASRGTATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGLNLSRKISPPL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1465 364 MobiDBLite consensus disorder prediction 229 282 - -
Apr5g1465 364 Pfam Helix-loop-helix DNA-binding domain 288 328 IPR011598 GO:0046983
Apr5g1465 364 MobiDBLite consensus disorder prediction 143 162 - -
Apr5g1465 364 MobiDBLite consensus disorder prediction 212 289 - -
Apr5g1465 364 SMART finulus 284 333 IPR011598 GO:0046983
Apr5g1465 364 Gene3D - 279 336 IPR036638 GO:0046983
Apr5g1465 364 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 362 - -
Apr5g1465 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 362 - -
Apr5g1465 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Apr5g1465 364 MobiDBLite consensus disorder prediction 212 227 - -
Apr5g1465 364 CDD bHLH_AtIND_like 279 341 - -
Apr5g1465 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 343 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1465 Apr-Chr5 18692805 18694311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1465 59 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.154 2.07e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g1465 HLH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1465 - - gmx:100779202 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1465 5 18692805 18694311 Apr5g1465 5 18692805 18694311 ECH