Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1458 ATGGCTCCGACTTCTTCACCTCCAGAGATCAACATTGAACCAGAGTATTGTCCTCAAGCCATCATTGATTGGTGCAACCACATTGCATCACAAGATCACAAGCCTCGTGGTTCCTCCTCAAGGGACCTTTCCTTAAAGGCAAAGAAGCACCTCTGTGCATTGGGTTGGAAATTTTGGTACATTGACAAGAAATATAAGTGGGAATTGCGTTACACTTCACCCAACAATGGCAAAACTTATATTTCCCTCAGAAGGGCATGCGAAAGTTGCATTGCAGAAGGACTCGAAAAGGGTACCCCTCAAATTGTTCCCGTGCTTCAAGAACACCCTTCAAAACCCAAGAAGAAAAAGCAAAGAATATGCAAAGAGGAGAGACAAAGCGATGCGGAGGAACACTCTGAATCAGAGTTAGAAGAAAGAGGTAGAGTTGTAAGAAGAGCCAAAAGGGTGTGGAATGAGGACGGGGCACAAGGTTCTGGTTCTTCACAACGTAATCCTCGAAAAATTATATCTTGGTTGCTTGATAACAAAGTTGTGGCTTTGCATTCGAGAGTTTTTTGTGGAGGTGCAAATAATGTGGTCAAGAAGGGGAAGTTAATGCATTGTGGCATTGCCTGTGATTGTTGTGGGTTGGTTTTTTCTATCTCTCGATTTGAGGCTCATGCTGAGTGTAACAAGCATAGACCTTCTGCTACTATTATCTTGGAAGATGGAAGATCTTTGTTGGATTGCCAAAATCAAGTCTTAAGTTCAAACGCGAAAGTGGTCAATGATAGCGTTTGTTCACATTGTCGTTTTGGTGGTGACGTAATGCTATGTGATTGTTGTCCCTCCTCATTTCACCTTGATTGTTTAGGTCTTGATAGTGTTCCTGACGGTGATTGGTTCTGCCCACGATGCTGTTGCAAGATTTGCCACAAACCCAGATGCAAAGAAGATTGTGCTGATGATCTGGATGATAACAGTGCTCTAATTTGTGATCAATGTGAGCGGAAATATCATGTTGGGTGCTTGAAAGCTAGAGGCTTTACCCGTCTGGGCAACCATCCTCCTAGGAAAATTTGGTTCTGCACTAGAAGCTGTGAAAAACTATATTTCAGACTGCAGGACCTAATAGGAAAAGAAAATCTTGTGGGTGAAGATAATCTAATTTGGACATTGTTGAAGATAGTGGAAAGTGATGAGAGTGAAGAATCAGATCCTTCATCTCGTGAATTTGAAGGGTTGAGTAAAATAAAAAAGAAGCTTAATTTGGCTGTTGGGTTATTGCATGAGTGTTTTGATCCACTTATTGATGCTTTCTCAGGGAGAGATATCGTTGCAGATGTTATTTTCAGTAGAGGCTTAGAATTTAGTCGTCTTGACTTTAGTGGATTCTATACTGTGGTTTTGGAGAGGAATAATGAGTTAATTTCTGTTGCCACTATACGGATTTTTGGTCAGAGTGTTGCTGAAATACCTCTCGTGGGTACCTGGAGCAAGTTTAGGAGACTGGGAATGTGTCGCATCTTGATGAATGAGATTGAGAAGAAGTTGAGTGATTTGGGAGTACGGAGGCTCGTTTTGCCTTCCACTCATAATGTGATACACACTTGGACTAACTCTTTTGGCCTTGAAAGGATGACAGTTTCAGATAAGTTTCAGTTCCTCGAACATACCTTTTTAGATTTCCAAGACACCATCATGTGCCACAAACCATTGCTGAATGCTTCAATTAATTATTAA 1725 0.4133 MAPTSSPPEINIEPEYCPQAIIDWCNHIASQDHKPRGSSSRDLSLKAKKHLCALGWKFWYIDKKYKWELRYTSPNNGKTYISLRRACESCIAEGLEKGTPQIVPVLQEHPSKPKKKKQRICKEERQSDAEEHSESELEERGRVVRRAKRVWNEDGAQGSGSSQRNPRKIISWLLDNKVVALHSRVFCGGANNVVKKGKLMHCGIACDCCGLVFSISRFEAHAECNKHRPSATIILEDGRSLLDCQNQVLSSNAKVVNDSVCSHCRFGGDVMLCDCCPSSFHLDCLGLDSVPDGDWFCPRCCCKICHKPRCKEDCADDLDDNSALICDQCERKYHVGCLKARGFTRLGNHPPRKIWFCTRSCEKLYFRLQDLIGKENLVGEDNLIWTLLKIVESDESEESDPSSREFEGLSKIKKKLNLAVGLLHECFDPLIDAFSGRDIVADVIFSRGLEFSRLDFSGFYTVVLERNNELISVATIRIFGQSVAEIPLVGTWSKFRRLGMCRILMNEIEKKLSDLGVRRLVLPSTHNVIHTWTNSFGLERMTVSDKFQFLEHTFLDFQDTIMCHKPLLNASINY* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1458 574 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 404 556 IPR000182 GO:0016407
Apr5g1458 574 Gene3D - 438 545 - -
Apr5g1458 574 CDD NAT_SF 462 522 - -
Apr5g1458 574 MobiDBLite consensus disorder prediction 102 140 - -
Apr5g1458 574 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 569 - -
Apr5g1458 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 301 IPR013083 -
Apr5g1458 574 SMART PHD_3 260 301 IPR001965 -
Apr5g1458 574 SMART PHD_3 302 361 IPR001965 -
Apr5g1458 574 SUPERFAMILY FYVE/PHD zinc finger 252 311 IPR011011 -
Apr5g1458 574 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 8 569 - -
Apr5g1458 574 MobiDBLite consensus disorder prediction 120 140 - -
Apr5g1458 574 Pfam Tify domain binding domain 197 247 IPR032308 -
Apr5g1458 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 364 IPR013083 -
Apr5g1458 574 ProSiteProfiles Zinc finger PHD-type profile. 258 303 IPR019787 -
Apr5g1458 574 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 445 548 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1458 Apr-Chr5 18632900 18634624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1458 161 515 PHD Transcription Factor Family AT5G58610 42.703 3.38e-89 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1458 - - aprc:113866262 1189.87