Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1439 ATGGATCTTGGTGCGGTGGGTTTGAATGGCTTGGTTGGTTCAGACACCACTGGATTTCCTCCTCCACTTGCTTCAGATCCTCAAACAAAGCACAAGTGGTACGGATCTGGGTTCCTTAATAAGCAAGAGAGATCTGACACCACTGAACATGACTGGAGCATCTCCAAACTTCCCAAGACTACTCATGATGATGACATCTCTGCTTCCAGAACAATGCCGTTCCACCATCACAACAACTTACTGAGATCTAATGCCACTCTCTTTTCTGATGCTCACCACCAACCTCAAATGCTCAGCTTCTCTTCTCAGAAGTCTGAACCTTTGCTAGTGGAGAAGCCTTCCCCAAATGCCACATTCCCATATTCTTTCCACCCTCTATCTAGTTACAACAAAAATACAGGTTACAGTTCTGGGAACATGCATGGGATTTTAACCGGAACAAGAGGGCCATTCACTCCATCTCAGTGGATGGAGCTAGAACACCAAGCCCTGATCTTTAAGTACATAACAGCCAATGTACCCGTACCATCTCATTTCCTCGTCCCCATCAAGAAAGCGCTTGAATCTGCCGGCTTCTATAACTTCTCAAGCTCACTTCTCAGATCGAATAATGCCGTGGGATGGGGAGGTTTTCATCTTGGATTCTCGAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGAAAAAAATGGCGGTGTTCGAGAGATGCCGTAGTGGATCAGAAGTATTGCGAGCGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACCGGAACTACTCCTCCAACTACTACAACAACCACAAATGCCACTTCTTTAACAACCATGCATAGTAACAACAATACAGTAATACACAGAAGCACGGCATCCAACAACCTCAGCATTGCACAGCACCAAACTAAGAATATGCAGCCTATTGCATCTGATACTTCTGTGCCTAACAATGTCAACAGGATAATTATGAATAACAAGGAGAATGGCAGCGAGAGAATCCCAGACACTGATGCACTTCCTATGTTGCCTGCCCCTCTTGAACTGAAGCCAAAGGAGACCCCCTTTGTGATTCACAAACAGCGGGTCCCATATGAGGAATCGTCGAGGAACGAGTTTGGGCTTGTCACGTCTGATTCCCTACTTAACCCTTCACAGAAAAACTTCACCTTGTTGAGCAGGAGAAGCTTTGGTTCATCACAAAACACAAGTAACCAAGAAACTGATTCACAACATTCCCTCAGACAATTCATCGATGACTGGCCTAAACCCAAAACTCAGTCTCATTGCTCAGGTGTTTCGTGGCCCGAACTTGACATGCAATCAGAGAGGACAGAATTGTCAATTTCAATCCCAATCACATCCTCGGATTTCATGTCATCCACTTCCTCTCCCACCAATGACAAGGTAACATTGTCACCCCTTAGGCTATCAAGGGAACTATACCCAATTCAGATGGGTTTGGGTGTTGGAAATGCTAATGCTATTAACGAGTCATCAAATAGTAGTAGGCAAACTAATTGGATTCCAATTGCATGGGAGAGTTCAATGGGGGGTCCTCTTGGAGAGGTTTTGAATCTTAGCAATAACAATAATGCAAGTGATCACTGTGTCAAAAACAACTCGGCCCTTAACCTCATGAGTGATGGGTGGGACAATAGTCCTCCCATAGGGTCTTCTCCCACTGGGGTTTTGCAAAAGACAGCATTTGGATCTTTATCTAATAGCAGTGCTGGGAGTAGTCCAAGGGCAGAGAATAAGACCCAAGAAGGAGCCAGTTTGTGCAATGACCTACTCGGTTCAACTCTAGGGAACTCTTCTTCCTTGCCTGCATTGTAA 1872 0.4562 MDLGAVGLNGLVGSDTTGFPPPLASDPQTKHKWYGSGFLNKQERSDTTEHDWSISKLPKTTHDDDISASRTMPFHHHNNLLRSNATLFSDAHHQPQMLSFSSQKSEPLLVEKPSPNATFPYSFHPLSSYNKNTGYSSGNMHGILTGTRGPFTPSQWMELEHQALIFKYITANVPVPSHFLVPIKKALESAGFYNFSSSLLRSNNAVGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTGTTPPTTTTTTNATSLTTMHSNNNTVIHRSTASNNLSIAQHQTKNMQPIASDTSVPNNVNRIIMNNKENGSERIPDTDALPMLPAPLELKPKETPFVIHKQRVPYEESSRNEFGLVTSDSLLNPSQKNFTLLSRRSFGSSQNTSNQETDSQHSLRQFIDDWPKPKTQSHCSGVSWPELDMQSERTELSISIPITSSDFMSSTSSPTNDKVTLSPLRLSRELYPIQMGLGVGNANAINESSNSSRQTNWIPIAWESSMGGPLGEVLNLSNNNNASDHCVKNNSALNLMSDGWDNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENKTQEGASLCNDLLGSTLGNSSSLPAL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1439 623 ProSiteProfiles WRC domain profile. 220 264 IPR014977 -
Apr5g1439 623 Pfam QLQ 150 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr5g1439 623 SMART QLQ_2 149 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr5g1439 623 MobiDBLite consensus disorder prediction 582 623 - -
Apr5g1439 623 ProSiteProfiles QLQ domain profile. 150 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr5g1439 623 Pfam WRC 221 263 IPR014977 -
Apr5g1439 623 PANTHER GROWTH-REGULATING FACTOR 9 25 602 - -
Apr5g1439 623 MobiDBLite consensus disorder prediction 267 287 - -
Apr5g1439 623 MobiDBLite consensus disorder prediction 251 287 - -
Apr5g1439 623 PANTHER - 25 602 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1439 Apr-Chr5 18484839 18488903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1439 35 582 GRF Transcription Factor Family AT2G22840 41.725 2.14e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Apr5g1439 WRC 5.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1439 - - aprc:113865097 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1439 5 18484839 18488903 Apr5g1439 5 18484839 18488903 ECH