Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1438 ATGAATTTGAAGATGGATTCTGATAGAGCGAAGCTGTTTGTAGGGGGCATTTCACGGGACACCACCGAAGATATTCTCAAACTCCACTTTGCCAAGTACGGTGTCGTTTTGGATTCCACGATTTCTGTAGACCGGAGCACCCGAAGCCCTAGGGGTTTTGGCTTCGTCACCTTCTCTGATCTGTCCGCAGCTGATAAAGCACTTCAAGACACGCACGTCATTCTCGGAAGAACGGTAGAAGTGAAAAAAGCTATACCCAGAAGTGAACAACAGCAACACCAAAACCAATTACAGAATAGAGGGGGTGGTAATTATAGTAGTAATGACTGTAGCAGTGACCACGTTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGTCGAATAACAGATGTAGTGGTGATGCAGGACAGTGTGACTCACCGGCCAAGGGGGTTTGGGTTCATAACATTTGATTCTGAAGAATCTGTTCAAAACGTTATGGTGAAAAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCAAAAGAGGGGAACCATGGGTATGACGGGTTTAATAAATTAAGATATAGGAGTGAAAGAGGGACTGCTAAAAATTTTCCTCCTTATAGTCCTAGGAATGTGCTCCCGGGTTTTGCTCCTTCACCATGGTATAGTAGTGACGGAGTGTACGCATATGGATCAAACACCTATGGTTGCTGGTATCCTATTGGTGGGTATGGGGGGAGTGGATATGCAGTTCCGTCTGATGCTTCTAGGAACTTCTGGTATGGGCCTATGATAACTGGTCCTCAGGCATGTCAGGTGCCTTATCCTAATGCTATGCCGGGTGTTGCGTATGTGGGTGGTAGGATTGGAATAGTAGGTAATGGTGCTGGATCTTGGGGGTACAATGGCATTCTTGGGTCTGCAACAAATTTGAAAATTGATCAACCTTTTAATGCCAATGGACTTGTTCCAGGCAATGTTACATCACCTCATGGTGTAAAGCAGGACGTTGACTCTTCAAGTTTGAAAGGGAGCAATGGCGAAATTTCTAGTTAA 1104 0.4457 MNLKMDSDRAKLFVGGISRDTTEDILKLHFAKYGVVLDSTISVDRSTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQHQNQLQNRGGGNYSSNDCSSDHVRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFNKLRYRSERGTAKNFPPYSPRNVLPGFAPSPWYSSDGVYAYGSNTYGCWYPIGGYGGSGYAVPSDASRNFWYGPMITGPQACQVPYPNAMPGVAYVGGRIGIVGNGAGSWGYNGILGSATNLKIDQPFNANGLVPGNVTSPHGVKQDVDSSSLKGSNGEISS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1438 367 MobiDBLite consensus disorder prediction 85 109 - -
Apr5g1438 367 MobiDBLite consensus disorder prediction 88 109 - -
Apr5g1438 367 SUPERFAMILY RNA-binding domain, RBD 113 205 IPR035979 GO:0003676
Apr5g1438 367 Gene3D - 2 113 IPR012677 -
Apr5g1438 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 359 - -
Apr5g1438 367 MobiDBLite consensus disorder prediction 340 367 - -
Apr5g1438 367 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Apr5g1438 367 SMART rrm1_1 119 191 IPR000504 GO:0003723
Apr5g1438 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Apr5g1438 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Apr5g1438 367 Gene3D - 115 202 IPR012677 -
Apr5g1438 367 MobiDBLite consensus disorder prediction 348 367 - -
Apr5g1438 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Apr5g1438 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Apr5g1438 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Apr5g1438 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1438 Apr-Chr5 18467386 18469551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1438 6 257 Eukaryotic Initiation Factors Gene Family AT3G16380 28.125 2.44e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1438 K14411 - gmx:100816822 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1438 5 18467386 18469551 Apr5g1438 5 18467386 18469551 ECH