Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1436 ATGGGTGGTCTTGAAAATGCCATGAGGTTTCAACATGGAAATGAGGGCATTCTAAACTGTCCAATATCGGGTTTGAGGACAAGTGTTTCAGAAAAGACAGTTAATTCTGTGTCTATGGCTATGCCTTCTGGTGTAGCTAATCCTTTTCTTGCTTCTTCCGCTTGGGATCAACTTGTTCCATTGAGTCAGGTTCAAACATTTAGAGGCTCCCAAGTGATTTCTCCTTGTGAGTTTGCCAATTCATCTTACCCTCTTGTTATGGAAAACCAGGGAATGAGTAGCAGCTCTCACCTTGTTCAATACATATCCGACTCAAATTTTGTGGACATGGTCCACAAGGCTCCCTCCTATGGAAGTGGGAGTTTATCAGAAATTGTTGGCTCTTTAAGCCTACCTCCATCTAGTGATATAGCTAACATAGAGTATCAGCCAAATCAAAATCCTAGCCATGTGGGTGTAATAGAAAGGAGTCCAATAAATAATGAGCAATCACAGGGTGAAGGTTCAACTCCTGAAGAGGGAGAAACAGGATCTGCACATGGTGAAAATAGAAGAAAGCGAGAACTTGATAACTCTAGTTTCAATCCAAATAAGAATGCTGAGGGGTATGCTATTAAAGATTCTTCGGGGAAGAGCTCTGATGGTGTGAAAGAACAATATGAAAAGAAACCAAGAGTTGAAGAAAATAACAGTGCAAATTTAAGTGGGAAGCAAAAGAAAGATAAATCTGACAGTGGAGAAGCTCCTAAAGAAAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATAAGCGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACAGGCAAAGCAGTAATGCTTGATGAGATTATAAATTACGTGCAATCACTGCAACAGCAAGTGGAGTTTTTGTCCATGAAACTTGCCACGGTAAACCCAGAACTGAGTTTTGAGGCGGAGAGGATTCTCTCCAAAGATGTTCTTCAGTCACACATTGGACACGTACCAATTGGTGGATATGGCCCTGCTATCAGTTGCACTCATCCATTCCCCTCTGGAAGTTTCCAAGGAACACTTTATAGCAGGCCGAGCACATCAACACAATTCCCTCCTTTGCCGCAGTCTGTTTTGAACCAAAGCTTCTATGGAATGAGCTATGATTCCAGTACAAATCTTGACAATTTGGGACACAATGGATGGTTGAAAACAGAGTTGTAG 1263 0.4173 MGGLENAMRFQHGNEGILNCPISGLRTSVSEKTVNSVSMAMPSGVANPFLASSAWDQLVPLSQVQTFRGSQVISPCEFANSSYPLVMENQGMSSSSHLVQYISDSNFVDMVHKAPSYGSGSLSEIVGSLSLPPSSDIANIEYQPNQNPSHVGVIERSPINNEQSQGEGSTPEEGETGSAHGENRRKRELDNSSFNPNKNAEGYAIKDSSGKSSDGVKEQYEKKPRVEENNSANLSGKQKKDKSDSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELSFEAERILSKDVLQSHIGHVPIGGYGPAISCTHPFPSGSFQGTLYSRPSTSTQFPPLPQSVLNQSFYGMSYDSSTNLDNLGHNGWLKTEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1436 420 Gene3D - 259 334 IPR036638 GO:0046983
Apr5g1436 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
Apr5g1436 420 MobiDBLite consensus disorder prediction 211 248 - -
Apr5g1436 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 329 IPR036638 GO:0046983
Apr5g1436 420 CDD bHLH_AtBPE_like 252 337 - -
Apr5g1436 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 420 IPR024097 GO:0006355
Apr5g1436 420 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 420 - -
Apr5g1436 420 MobiDBLite consensus disorder prediction 160 248 - -
Apr5g1436 420 Pfam Helix-loop-helix DNA-binding domain 265 313 IPR011598 GO:0046983
Apr5g1436 420 SMART finulus 268 318 IPR011598 GO:0046983
Apr5g1436 420 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1436 Apr-Chr5 18432774 18435796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1436 240 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 61.828 4.26e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g1436 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1436 - - gmx:100801930 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1436 5 18432774 18435796 Apr5g1436 5 18432774 18435796 ECH