Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1427 ATGGGTTTTGATATCTCTAACTCAGGGATTCGACTTGGTCTTGGTCTTGGCCTCCATGATCAGTCATCAGAAAATTGCATGAAGATCATTGATGATGAGCACAAGCATATACAAAGCCAGAAGAAAAAGGAAGAGGATCCGTGTAATAAGGCTTCGTACCCATCACTTACGTTAGGACCCTCTCATGATGAGGCAAATAATCAACAAATTACAAAGACTGAATCGGATGAATATTATTATATTCATATTCATCCACATGCCTCTTCTCCAGGCGCAGTGTCTTCATTTTCTAACTCTTCCAGCATCAAGAGGGAAAGAGATCAATTCGCGGGGGAAGAACTTGAGCTAGAGGTAGAAAAGATTCCATCAAGGGTTGTTGTTGATGTTGATGAAAATGGTAAGCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCTGCAGTCTTAGAAGATAGCTTCAAAGAGCATTCTACTCTCAGTCCGAAACAGAAACAAGAATTGGCAAAGAAACTGAATCTGCGAGCGAGACAAGTGGAGGTCTGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAACAAACTGAGGTGGATTGTGAGTTACTGAAGAAGTGTTGTGAAACTCTATCAGATGAGAATAAGAGGCTGCAAAAAGAGCTGCAAGAACTAAAATCGATGAAAACAACGCAAGGACACTTTTATATGCAGCTTCCAGTAGCAAGCCTTACAATTTGCCCTTCTTGTGAGAGAATTTGCGGTGGCAACAACGGAGGGATTAACAATGGATCCTCTCCCACCACGGCTTTGCTTATTGGCCCGAAGCCCAATCAACACTTCTACAAAAATAACTATACATTCACTCAATCATCTGCAGCTTGCTAG 879 0.4198 MGFDISNSGIRLGLGLGLHDQSSENCMKIIDDEHKHIQSQKKKEEDPCNKASYPSLTLGPSHDEANNQQITKTESDEYYYIHIHPHASSPGAVSSFSNSSSIKRERDQFAGEELELEVEKIPSRVVVDVDENGKPRKKLRLTKEQSAVLEDSFKEHSTLSPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLSDENKRLQKELQELKSMKTTQGHFYMQLPVASLTICPSCERICGGNNGGINNGSSPTTALLIGPKPNQHFYKNNYTFTQSSAAC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1427 292 Coils Coil 198 228 - -
Apr5g1427 292 CDD homeodomain 135 193 IPR001356 GO:0003677
Apr5g1427 292 SMART HOX_1 134 196 IPR001356 GO:0003677
Apr5g1427 292 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Apr5g1427 292 MobiDBLite consensus disorder prediction 37 64 - -
Apr5g1427 292 PANTHER - 5 291 - -
Apr5g1427 292 SUPERFAMILY Homeodomain-like 133 200 IPR009057 -
Apr5g1427 292 Gene3D - 129 197 - -
Apr5g1427 292 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Apr5g1427 292 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Apr5g1427 292 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Apr5g1427 292 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Apr5g1427 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1427 Apr-Chr5 18335537 18337111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1427 102 292 Homeobox Transcription Factor Family AT2G22800 59.709 9.70e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr5g1427 Homeodomain 9.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1427 K09338 - gmx:100790927 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1427 5 18335537 18337111 Apr5g1427 5 18335537 18337111 ECH