Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1426 ATGGAGGAATACACTAATAATCACCCAAGTCCAAGGGCAAATTTGTTGTACTCCTTGGCCGGTGGTTCAAGCGGAGGATCAAACTGCCACCATCAGCTTCCCATGAACACCTTTCATCTTCAATCTGGTGGATCGGATCACTGCTTTCAATCGGATCAAGAACCACACCCTAGTGTGAAAACCGAGTCCAACAATTCCCACCTTCGCTCTCCTATTTTCCACTATCCTCTAATGAGAACAAATCTTCACCACACTCAGCAAGGAGGGAGCCAGAGCTCTAACGAACTTGAAGCCATAAAAGCCAAAATCATTGCCCATCCTCACTACTCCAATCTTTTAGAAGTTTACATGGATTGCCAAAAGGTGGGAGCTCCGCCAGAAGTTGTGGCGCGTTTGGCTGCGGTACGACGGGATTTTGAGGCACCGCAGCGATCTTCGGTTAGGTCTAGGGAAGGTTGCAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTGTGACATGCTGGCGAAGTATCGAGAGGAATTAACGAGGCCTATACAAGAGGCTATGGATTTCATGCGTAGGACGGAAACTCAGCTGAACATGCTTTGCAATGGAACCGTGCGGATCTTCTCTGATGATAAATGTGAAAACATTGGTTCATCGGAAGAGGATCAAGACAACAGTGGCGGAGAAACTGAACTGCCCGAGATTGATCCTCGGACAGAAGACCGTGAACTCAAAAACCGCTTGCTCAGGAAGTACAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCAAAGAAGAAGAAAAAAGGAAAACTGCCTAAAGATGCAAGGCAAAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCGCTGGCAGAATCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGCGGCATTGGAAACCATCGGAAGACATGCAATTTATGGTGATGGATGGCTTGCATACGCAGAACACTGCTCTCTATATGGATGCCCACTACATGGTTGATGGCCATTACCGTTTGGGACCATAA 1077 0.4624 MEEYTNNHPSPRANLLYSLAGGSSGGSNCHHQLPMNTFHLQSGGSDHCFQSDQEPHPSVKTESNNSHLRSPIFHYPLMRTNLHHTQQGGSQSSNELEAIKAKIIAHPHYSNLLEVYMDCQKVGAPPEVVARLAAVRRDFEAPQRSSVRSREGCKDPELDQFMEAYCDMLAKYREELTRPIQEAMDFMRRTETQLNMLCNGTVRIFSDDKCENIGSSEEDQDNSGGETELPEIDPRTEDRELKNRLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHTQNTALYMDAHYMVDGHYRLGP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1426 358 SMART HOX_1 262 327 IPR001356 GO:0003677
Apr5g1426 358 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Apr5g1426 358 MobiDBLite consensus disorder prediction 212 237 - -
Apr5g1426 358 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Apr5g1426 358 SMART KNOX2_2 148 199 IPR005541 GO:0003677|GO:0005634
Apr5g1426 358 CDD homeodomain 272 324 IPR001356 GO:0003677
Apr5g1426 358 ProSitePatterns 'Homeobox' domain signature. 298 321 IPR017970 GO:0000981|GO:0006355
Apr5g1426 358 SUPERFAMILY Homeodomain-like 261 334 IPR009057 -
Apr5g1426 358 Pfam ELK domain 240 261 IPR005539 GO:0003677
Apr5g1426 358 Gene3D - 265 327 - -
Apr5g1426 358 SMART ELK_2 240 261 IPR005539 GO:0003677
Apr5g1426 358 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Apr5g1426 358 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Apr5g1426 358 MobiDBLite consensus disorder prediction 44 66 - -
Apr5g1426 358 Pfam KNOX2 domain 153 198 IPR005541 GO:0003677|GO:0005634
Apr5g1426 358 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 350 - -
Apr5g1426 358 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 4 350 - -
Apr5g1426 358 Pfam KNOX1 domain 98 139 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1426 Apr-Chr5 18325383 18330746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1426 45 358 Homeobox Transcription Factor Family AT4G08150 68.502 2.29e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr5g1426 KNOX2 7.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1426 - - aprc:113866252 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1426 5 18325383 18330746 Apr5g1426 5 18325383 18330746 ECH