Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1424 ATGATCCCAAACCTTCACATTCCTCAATCAGAAAATGGAACTCTCTCTCCATTCTCTTCCAATGCACTTGAAACACACGCGCTGGCCGAGGTTTTCGACCTTTTCTCCACAGATCAGTTCCGAATGTACCAATTCAAGGTGAGGGAGTGTCCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCCCATCCCGCCGAGAAGGCTCGCCGCCGAGACCCTCGCAAGTACCACTACTCCGGCACGGCCTGCCCCGATTACCGCAAAGGAAATTGCAAGAAAGGTGACACGTGTCAGTTCGCTCACGGCGTCTTCGAATGCTGGCTACACCCCTCTCGCTACAGGACTCAGCTCTGCAAGGACCGGACTGGTTGCCGGCGCAGAGTTTGCTTCTTCGCTCACACCACCGACCAACTCCGTTCACTCTCGCCCGAACCGTTTGTTTCTTCTCCCACCTCCGTCATTAACTCTTCGTTCTCCGAGTCGCCACCCGCTTCGCCCGGTAACTCTCGATACCGTGCCTTACCTGTGAGTGTACGCGAATTGGTTAACTCAATGCGGAATGTTCAACTGGAGGAGGGGGCTTCTTCGAGATGCGTGTTTGGGTCGCCACGTGGCGGGTTTTTGAGTTTGAATGGGTGGGAAGAAGAACCTGCTATGGAGAGGGTGGAATCGGGAAGAGACCTTAGAGCGAAAATATACGCGAAGCTTAGTAGGGAGAATTCGATTGGGCCGTTTTCAACCCCTGCCCCTGATATTGGATGGGTCTCGGAACTGGTGAAGTGA 789 0.5437 MIPNLHIPQSENGTLSPFSSNALETHALAEVFDLFSTDQFRMYQFKVRECPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYRKGNCKKGDTCQFAHGVFECWLHPSRYRTQLCKDRTGCRRRVCFFAHTTDQLRSLSPEPFVSSPTSVINSSFSESPPASPGNSRYRALPVSVRELVNSMRNVQLEEGASSRCVFGSPRGGFLSLNGWEEEPAMERVESGRDLRAKIYAKLSRENSIGPFSTPAPDIGWVSELVK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1424 262 Gene3D - 79 143 - -
Apr5g1424 262 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Apr5g1424 262 PANTHER UNKEMPT FAMILY MEMBER 25 262 IPR045234 -
Apr5g1424 262 ProSiteProfiles Zinc finger C3H1-type profile. 80 106 IPR000571 GO:0046872
Apr5g1424 262 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 104 IPR000571 GO:0046872
Apr5g1424 262 SMART c3hfinal6 114 137 IPR000571 GO:0046872
Apr5g1424 262 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Apr5g1424 262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 25 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1424 Apr-Chr5 18302737 18304337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1424 34 163 C2H2 Transcription Factor Family AT5G12850 60.769 3.63e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr5g1424 zf-CCCH 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1424 - K23048 gmx:100786368 370.548