Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1423 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTTAAGAGAGGGCCTTGGTCTCCTGAAGAAGACGCTACCCTCAAAGGGTATGTAGAGATTCATGGCACCGGGGGGAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGGCGGTGTGGTAAAAGCTGCCGTCTTCGGTGGCTAAATTACCTTAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAAGACCACATCATTTGCACCCTCTACAGTCAAATGGGAAGCAGATGGTCTACCATAGCCTCTCAGCTTCCTGGCAGAACAGACAACAATATCAAAAACTATTGGAACACGAAACTAAAGAAGAAGCTAATGGCTGGAAAAGTTAGCTTCAAAACGATAGCTGACGATGACACTCAAACTCAAAATGAAGAGACTCAAATTTCATATTTTCATGCTTCACAAAATCAAAGCTCTACCATAGTCTCAGAAACTGGTGCTGAATGGAGTAATAATTCCATGGTGTCATTGTCTCAAGGTGGTTCAAGCATGTCAGATTTGTCTTCCTTTGCAGTGGACAACGTTAACGATTGTGTGGCAGAACATGAAGGTCATAAAGCAATGGATTTGTTGTTGGATTTTGACTATGGATTTCCTTATAATATTGTTGAGGCCTTTTTACTATCATGA 669 0.4245 MGRAPCCDKANVKRGPWSPEEDATLKGYVEIHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDHIICTLYSQMGSRWSTIASQLPGRTDNNIKNYWNTKLKKKLMAGKVSFKTIADDDTQTQNEETQISYFHASQNQSSTIVSETGAEWSNNSMVSLSQGGSSMSDLSSFAVDNVNDCVAEHEGHKAMDLLLDFDYGFPYNIVEAFLLS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1423 222 PANTHER OS09G0431300 PROTEIN 1 154 - -
Apr5g1423 222 CDD SANT 71 113 IPR001005 -
Apr5g1423 222 PANTHER OS09G0431300 PROTEIN 1 154 - -
Apr5g1423 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr5g1423 222 CDD SANT 16 62 IPR001005 -
Apr5g1423 222 Gene3D - 70 145 - -
Apr5g1423 222 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr5g1423 222 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr5g1423 222 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr5g1423 222 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr5g1423 222 SMART sant 13 64 IPR001005 -
Apr5g1423 222 SMART sant 67 115 IPR001005 -
Apr5g1423 222 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr5g1423 222 Gene3D - 7 68 - -
Apr5g1423 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1423 Apr-Chr5 18288109 18289256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1423 1 118 MYB Transcription Factor Family AT5G65790 83.051 1.55e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1423 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1423 K09422 - gmx:100817747 290.041