Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1410 ATGGAGAGTGATATGTACAAGATTTCCGGTCGAGCTTCTAATGTAATAGATGGAATTTCACAACATTCCACCTCAAACCCTCTGATTCAGTGCTACTCGGTTGACCTTAACAACCAATCCCATATCATAAATGGAATATCAATGCTTTCTGGAGAGCAAGGTGGACCTTTAAGTAACGTCCATGCTGAGGATTGCTTCACAAATTCTGCAAATATTGCTGACTCCAGTTCGTTAGTTACATCTCGAGGAAAGACTATTGTGGGAGATGCTTCAAATCCCATGGAGAACACTGAATTTCAAGACCATTTAGTTGGAGGAATGCCTATTACTCCTGCTTCACTTGCTGCAATTCTTGCCGCTAGAATTGGTCTTCAAGAAAATTTAGAGAATTCAGCAGCTTTGCCTCGTTCACTCTGCTCAATGGGGGCATTGGGACCATTTTTCAACAATTCACAAGATACTTCAAATCCTTTGCCTACAACTTTTGAGGACTGTGGTTATGATGAAGTTCCTAACAAGTGGAATGCCAACAAGTTTTCTAAAGCTCCAGAGATTGATGGAACTGGGTGTCAACCTTATTCTTCTATAGGAAACCTGGATCCAGGTGGATGGGCATCATCAAATGTTGCAAACATAATCAATCATTCTTACCATTCCTCGAACTTCAGTAATGAACTTTCTCTAAGCCTTGCAACATCTACAACCCCAGGACAGTGCTCAGAGGTCAGTTGCTCTGATGTGACACCATGCATGAATGGAACCGTGTCAGGCTTGGAGCAAGCCTCCTGTAGCAGTAGTAGGGAATTTTCTATGAGTTTGAGTGGTAATAAATATGTGCAGTTTTCACCCGAAGTTCTGGGATCAAGATATCTTGCTGGTATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTGGAACAAATAAATTATGGTAGTAGAGCAGGTGGAAGTAAGTCAACTTTAACCTTCCCACCCAATGGGAAAATATTGACAAATCACAAAGCAAACTCTATGCATGAAGCTCATGCTGAATCTCCATTGCAAAGGCATGCTGCTGAATCAAAGAAAGCCCAGCTGCTGACACTTCTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACACACCGTTGTATCGGCATTCCATGCTGCTACTGAGCTGGATTCGCAAATACATGCACACTTTGCCCTTCAAACGATCTCTATCCTTTATAAGGACTTACGAGAGAGGATTAGCAATTATATTCTTGCCATGGGATCAAACTTCAACGACTTGTGCTCAGAAGAGAAGGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAATGGCCACTCCAGCACTTGAAAAGAAAAGATCATCAACTATGGAGGCCCCAAAGAGGCTTACCAGAAAGATCAGTTTCAGTTCTAAGGGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACCAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAATAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATGCAGAGCAATCACGGTAACAGGATAGGCATGAGTAGTAATCAAAGGTTTAATGTCAATTAA 1692 0.4137 MESDMYKISGRASNVIDGISQHSTSNPLIQCYSVDLNNQSHIINGISMLSGEQGGPLSNVHAEDCFTNSANIADSSSLVTSRGKTIVGDASNPMENTEFQDHLVGGMPITPASLAAILAARIGLQENLENSAALPRSLCSMGALGPFFNNSQDTSNPLPTTFEDCGYDEVPNKWNANKFSKAPEIDGTGCQPYSSIGNLDPGGWASSNVANIINHSYHSSNFSNELSLSLATSTTPGQCSEVSCSDVTPCMNGTVSGLEQASCSSSREFSMSLSGNKYVQFSPEVLGSRYLAGIQEILAQIARYSFENLEQINYGSRAGGSKSTLTFPPNGKILTNHKANSMHEAHAESPLQRHAAESKKAQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDSQIHAHFALQTISILYKDLRERISNYILAMGSNFNDLCSEEKEWSVETSFLQKQWPLQHLKRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGMQSNHGNRIGMSSNQRFNVN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1410 563 MobiDBLite consensus disorder prediction 543 563 - -
Apr5g1410 563 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
Apr5g1410 563 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Apr5g1410 563 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 558 - -
Apr5g1410 563 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Apr5g1410 563 CDD homeodomain 463 524 IPR001356 GO:0003677
Apr5g1410 563 MobiDBLite consensus disorder prediction 541 563 - -
Apr5g1410 563 SMART prehox3 279 420 IPR006563 -
Apr5g1410 563 Pfam Associated with HOX 285 419 IPR006563 -
Apr5g1410 563 SMART HOX_1 463 527 IPR001356 GO:0003677
Apr5g1410 563 Gene3D - 466 545 - -
Apr5g1410 563 PANTHER HOMEOBOX PROTEIN ATH1 9 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1410 Apr-Chr5 18200319 18202744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1410 224 536 Homeobox Transcription Factor Family AT4G32980 57.595 9.48e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr5g1410 POX 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1410 - - gmx:100820354 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0313 9 4086571 4090134 Apr5g1410 5 18200319 18202744 PCT