Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1399 ATGGCAGAACCTTCTCACATTCTTCAGAAAGAGGTAAAATATTTATCTCTGTCTCTAGAATCTTCCTCACCCTTTCCCTTAAATTCCTTATTCGCCATGCCTCTACTACCAAGTGCTAATCCACTCCATTTCAACGAAAACCACACACAACCGAAAACGGAGATGAAGGGAGTTACAGTGAAAGAGGAAGAGACAGCGCCATTCGCCACGGTTTCTTCGTCCTCCAACCTCTCTCCTCAACCCATGGAAGGGTTGCACGAGGTGGGTCCTCCTCCATTTCTGACCAAAACTTTCGAAGTCGTCGAAGACCCTTCCACTGACTCCATCGTTTCGTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCAACCACCGTTTTACCTCGTTACTTCAAACACAACAATTTCTCCAGCTTCGTTCGTCAACTCAACACTTACGGGTTCAGAAAGATTGATCCTGATCGATGGGAATTTGCGAATGAAGGGTTTTTGGCGGGGCAGAAGCATTTGTTGAAGACGATAAAGAGAAGAAGGAACGTGACTCAGCCGCAGAGCGTGGGTGGAGGTGGGGCTTGTATTGAGTTGGGTGAGTTTGGGCTTGAAGGTGAGGTTGAACGGCTGAGGAGAGATAGAACGGTGTTGATGGCTGAAATTGTGAAGTTAAGGCAGCAACAGAACAATTCAAAGGAGCAAGTGTTGACCATGGAAGCTAGGTTGCAAGCTACTGAGAAGAAACATCAACAGATGATGACTTTTCTTGCCAAAGCACTTAGTAATCAATCTTTTGTGCAACAGCTTCTACAGAGGAATGCTCAGAAGAGAGAATTGCAGGGTGTCAGGAGAAAGAGGAGACTCGCTGCTTCTCCTAGTGTGGAGAATTTGCAATTGGATCAGGATCCTGTGATTGCTGCAGTTCCATTTGAGGAACAAAATGGAGAAGAGTTGGCAGCTATTGAGTCCCAGATGGAGTCTTTTTTCTCTTGTGATGAAGAATCGAGCAGTGAAATCAAAGACCCAATATCGGGTTCAGTTCCAATTGCAAGTGGGAGTGATGCAATCTGGGAGGACTTGTTGAGGCAAGAGTTGGTTGTAGGGGATCCTGAGGATGAGGTTGTGATTGGTGATTTTTCGCAAATTGATGCTCCTGTGGAGGATTTGGTAGCAAGGCCTGATGATTGGACTGAGGACTTGAAAAATCTCGTGGATCATATGGGTTATGTTGGGTCCAAACCGTAG 1251 0.462 MAEPSHILQKEVKYLSLSLESSSPFPLNSLFAMPLLPSANPLHFNENHTQPKTEMKGVTVKEEETAPFATVSSSSNLSPQPMEGLHEVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHKFSTTVLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKTIKRRRNVTQPQSVGGGGACIELGEFGLEGEVERLRRDRTVLMAEIVKLRQQQNNSKEQVLTMEARLQATEKKHQQMMTFLAKALSNQSFVQQLLQRNAQKRELQGVRRKRRLAASPSVENLQLDQDPVIAAVPFEEQNGEELAAIESQMESFFSCDEESSSEIKDPISGSVPIASGSDAIWEDLLRQELVVGDPEDEVVIGDFSQIDAPVEDLVARPDDWTEDLKNLVDHMGYVGSKP* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1399 416 SMART hsfneu3 89 182 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 Gene3D - 86 183 IPR036388 -
Apr5g1399 416 PRINTS Heat shock factor (HSF) domain signature 93 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 PRINTS Heat shock factor (HSF) domain signature 131 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 PRINTS Heat shock factor (HSF) domain signature 144 156 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 71 366 - -
Apr5g1399 416 SUPERFAMILY "Winged helix" DNA-binding domain 89 182 IPR036390 -
Apr5g1399 416 Pfam HSF-type DNA-binding 93 182 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 ProSitePatterns HSF-type DNA-binding domain signature. 132 156 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1399 416 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 71 366 IPR027725 -
Apr5g1399 416 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1399 Apr-Chr5 18112229 18114210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1399 79 416 HSF AT2G26150 54.598 1.24e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr5g1399 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1399 K09419 - gmx:100794605 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0290 9 3792694 3795571 Apr5g1399 5 18112229 18114210 PCT