Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1390 ATGATGAAAGAAGCGGTAGTTGATGATAGTGATGTTTTGAGAGGACTTCTAGAATTTGCAAACAGGAATCTCATACACAGTGTCGTCATCGGTGCATCCAACAAGAACGCTTTGTCAAGTCTCAAAAAATTTAAAACATATCATTTTGATATACCAACAGCCATGATGAAATCAGCCCCAGATTTTTGCTCTGTATACATAATTTCCAAATTGAAGATTGTGTCAGCTCGATCAGCAGCAAGATCAGTGGCAAAAAATTTTATGTCCCCAGCAAAACAATATCCTGTGCCGGCAGGTCCATCTATTGATTCAGAAGGAGGATCATTAAGGGGACAATCAAGTAGGAGTAGGGGCACTTATGAAGGACAAGAAGCAATAAGATCACAAATACGTGAGAAGCCAAGAAGTGCAGGAAGTAATATGTCAATGGAGAGCATTGATATACAATCTCGTCCACGACATTGGTCAATGGATGAAAGAGAAATTTCGGGGCTTGGGCAAATGGATGCAATCAAACGAGAACCTGAGTCATCATCAGATGGCACAACATCAGCTTCCAATTCTAAAGAGCTGGAAGCCGAGATGAAAAGATTGAGGCTCGAACTGAAGCAGACTATGGACATGTACAGTTCAGCTTGCAAACAAGCAATCTCAGCCAAAAATCAGGCAGAACAGATTCATCAATGGAAACTGGAAGAGGGACGTAAGGTTGAGGAGGTTAGGTTGTCTCAAGAGGCAGCTCTTGCAATGGCAGAAAAGGAGAAGGCTAAAGCCAAAGCTGCATTGGAAGCAGCTCAGGAAGCCAGGAAGAGGGCTGAAGAGGAAGCACAAAGAAGAAAGGATGCAGAGATGAAGGCAAAGAAAGAGGCAGAAGAGAAAGATCGAGCATTAACTGCATTGGCTCAAAATGATAATCGATATAGAAAATACACCATAGAGGAGATTGAAGAAGCCACAGAAAAGTTTTCCCCTTTAAAAAAAATAGGTGAAGGTGGATATGGGCCTGTATATAAAGGCCAACTTGATCACACCCCAGTTGCAATTAAAATTTTGAGTCCTGATGCATCTCAGGGCAGAAAGCAGTTCCAACAAGAGGTTGAGGTACTAAGCGCCATTAGACATCCTAATATGGTCCTACTCCTTGGTGCATGTCCTGAGCATGGGTGCTTGGTGTATGAATTCATGGATAATGGTAGCTTAGAAGATAGATTATACCGGAAAAATAACAGCAGGCCTATTTCATGGAGGAAACGATTCCAAATAGCTGCAGAGATTGCCACTGCACTCCTTTTCCTTCACCAAAACAAGCCAGAGCCTATTGTGCACAGAGACCTTAAACCATCGAACATTCTCTTGGACAGAAATTATGTGAGCAAAATCAGTGATGTTGGTCTTGCAAGACTAGTCCCTCCTTCTGTAGCTGATACTGTCACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAATCGGGGATACTAACAACAATGTCAGATATATATTCATTGGGCATAATGCTATTGCAGATAATCACAGCCAAGCCTCCAATGGGTCTTGCTCACCAAGTTAGAAGGGCAATTGAAAAGGAGAAGTTTGAAGATGTGCTTGACCCTGTGGTGACTGATTGGCCAGTAGAAGAAGCTAAAGCATTTGCCAAATTGGCATTGAGTTGTTCAGAACTCAGCAAGAAGGACAGGCCAAATCTTGCAACAGTTGTGTTGCCAGAACTTAACAGGTTATGCGATCTTGGATTTACTTTACCCAATGATCAAGTTACTATTAGTGATGAGCAAAGCTCAAGCTATGCGGCACGCCCTCCCACACCAACTGGAAATCCACATTCAAAGACGTCCAAATAG 1884 0.423 MMKEAVVDDSDVLRGLLEFANRNLIHSVVIGASNKNALSSLKKFKTYHFDIPTAMMKSAPDFCSVYIISKLKIVSARSAARSVAKNFMSPAKQYPVPAGPSIDSEGGSLRGQSSRSRGTYEGQEAIRSQIREKPRSAGSNMSMESIDIQSRPRHWSMDEREISGLGQMDAIKREPESSSDGTTSASNSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIHQWKLEEGRKVEEVRLSQEAALAMAEKEKAKAKAALEAAQEARKRAEEEAQRRKDAEMKAKKEAEEKDRALTALAQNDNRYRKYTIEEIEEATEKFSPLKKIGEGGYGPVYKGQLDHTPVAIKILSPDASQGRKQFQQEVEVLSAIRHPNMVLLLGACPEHGCLVYEFMDNGSLEDRLYRKNNSRPISWRKRFQIAAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQQSGILTTMSDIYSLGIMLLQIITAKPPMGLAHQVRRAIEKEKFEDVLDPVVTDWPVEEAKAFAKLALSCSELSKKDRPNLATVVLPELNRLCDLGFTLPNDQVTISDEQSSSYAARPPTPTGNPHSKTSK* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1390 627 CDD STKc_IRAK 328 588 - -
Apr5g1390 627 MobiDBLite consensus disorder prediction 604 627 - -
Apr5g1390 627 PANTHER OS02G0152300 PROTEIN 2 608 - -
Apr5g1390 627 Coils Coil 188 208 - -
Apr5g1390 627 SUPERFAMILY Protein kinase-like (PK-like) 306 581 IPR011009 -
Apr5g1390 627 MobiDBLite consensus disorder prediction 106 123 - -
Apr5g1390 627 Gene3D Phosphorylase Kinase; domain 1 300 394 - -
Apr5g1390 627 MobiDBLite consensus disorder prediction 94 191 - -
Apr5g1390 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Apr5g1390 627 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 2 608 - -
Apr5g1390 627 MobiDBLite consensus disorder prediction 133 149 - -
Apr5g1390 627 Gene3D Transferase(Phosphotransferase) domain 1 395 591 - -
Apr5g1390 627 SMART serkin_6 322 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1390 627 MobiDBLite consensus disorder prediction 268 294 - -
Apr5g1390 627 ProSiteProfiles Protein kinase domain profile. 322 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1390 627 Pfam Protein kinase domain 324 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1390 627 Coils Coil 248 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1390 Apr-Chr5 18039586 18042486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1390 2 592 Receptor kinase-like Gene Family AT5G12000 58.147 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr5g1390 Pkinase 9.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1390 - - gmx:100798861 868.611