Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1387 ATGGAGGAGATGTCGACCACGATTGTAGTGCCATTAAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATTGCTAAACACTTGGATGTATCCAGACTTAAGCTGATGGCTGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCAACTAAGACTTTTATATGCTCCGATGAGAACGTTGACCATCTGGAGGATGAAGTTGGTATTGCTGCAGTCGCACCTCCAAAACAGGGAAGACAAGGAGAAATTCCATTGTTGAGTATGATATCTCAAAACAGAAGCTCTTTGGTTGTTCGGGATGAAGCTTTAAACCCTGAATTTGAGGAGGATGATTCGTTATCATTGGATGGGGATCCAGTTGTTGATAGCTTTTATTTTTCAGTAGCAAGTGAGAGTAGTAGTGTTTGTGGAGATGAGTTCAACAGTTCTGAGGTTTCTTCAGATTTAGGGACAGCAAGTTCCACAGACATAGAGAAGAGTATCTCTGCTGCCAATATTGTAGCGGGGGCCACAGATATGGGCAGGTCAAATGTGGAGGTAGATATTATGAATGAACCCCTAGCAGAAGCAGTGAGCCTTGAAGAAGAAATAGGAGTTAGATCTGGCCCAAAGCCTACTACAGCTGTCCTAAATCAACGACCTCTGGAAAGAGCTGTGAGTGGAACAGTTGGGCGAAGTGTTTTTGAATTAGATTGTACTCCACTTTGGGGATTTACATCTATGTGTGGAAAAAGGCCAGAGATGGAAGATGCAGTTGCAACTGTACCTCAATTTTTTAAAATTCCTATTCGAATGCTAATAGGTGATAGGGTACCTGATGGAATAAACAAATGTTTCAGTCAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTAGCAAATTATTGTCGTGAGCGCATGCATTTGGCATTGGCTGAGGAAATAGAATTTGCCAAGGAAAGTTTAAAAGCTGGAAGTACCAAGGATGATTGTCAAGATCAGTGGAGAAGAGCTTTCACCAATTGCTTTTTGAAGGTTGATGCTGAAGTTGGGGGGAAAGTTAATTGTGAACCTGTTGCCCCAGAAACTGTTGGGTCAACTGCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTGCAAACAGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGTAAAGAACCCATGGCGCTATCTGTTGATCACAAACCAAATCGTGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAGGTGATACAATGGAATGGTCATCGAGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGGGATAGATATTTGAAGCCATGGATTATTCCAGATCCTGAAGTTATGGTTCTTCCTCGTGCAAAAGACGATGAATGTCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAATGAAGAGGTGTGTGACCTGGCTCGAAGACGTATACTTCTCTGGCACAAGAAAAATGGCTTGGAACTGCCCCCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCAGAATACCTATCAAACCGCGCTCTTCAGAAGGGCAGCAAAGATAACATCACTGTTATTGTGGTGGACTTGAAAGCACAGAGAAAATTTAAGAACAAGACATGA 1653 0.4283 MEEMSTTIVVPLRVGNSVCDKPTIAKHLDVSRLKLMADAGLLSNSITKVSTKTFICSDENVDHLEDEVGIAAVAPPKQGRQGEIPLLSMISQNRSSLVVRDEALNPEFEEDDSLSLDGDPVVDSFYFSVASESSSVCGDEFNSSEVSSDLGTASSTDIEKSISAANIVAGATDMGRSNVEVDIMNEPLAEAVSLEEEIGVRSGPKPTTAVLNQRPLERAVSGTVGRSVFELDCTPLWGFTSMCGKRPEMEDAVATVPQFFKIPIRMLIGDRVPDGINKCFSQQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIEFAKESLKAGSTKDDCQDQWRRAFTNCFLKVDAEVGGKVNCEPVAPETVGSTAVVAIICSSHIIVANSGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMVLPRAKDDECLILASDGLWDVMTNEEVCDLARRRILLWHKKNGLELPPERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKNKT* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1387 550 CDD PP2Cc 238 540 IPR001932 -
Apr5g1387 550 Gene3D - 223 550 IPR036457 -
Apr5g1387 550 PANTHER ALPHABET, ISOFORM E-RELATED 108 550 - -
Apr5g1387 550 ProSitePatterns PPM-type phosphatase domain signature. 287 295 IPR000222 GO:0043169
Apr5g1387 550 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 108 550 - -
Apr5g1387 550 Pfam Protein phosphatase 2C 273 533 IPR001932 -
Apr5g1387 550 ProSiteProfiles PPM-type phosphatase domain profile. 236 540 IPR001932 -
Apr5g1387 550 SUPERFAMILY PP2C-like 232 541 IPR036457 -
Apr5g1387 550 SMART PP2C_4 226 538 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1387 Apr-Chr5 17998492 18003864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1387 172 550 PP2C-type Phosphatase Gene Family AT1G17550 59.296 8.09e-160 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1387 K14497 - gmx:102662702 886.715