Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1377 ATGGACGCAGCAGCACACGACAATCCCCGTACGGTGGAAGAGGTCTTCAGAGATTTCAATGGCCGCAGAGCTGCCGTGATTAAGGCCCTCACCACTGATGTTCAAGAGTTCTATCAGCACTGTGATCCAGAGAAGGAAAATCTTTGCCTCTATGGATTTCCTAGTGAGCACTGGGAAGTCAATCTCCCTGCTGATGAGGTGCCTGCAGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTAGTTGCTGTACACAGTGATGCATGGTTACTTGCTGTGGCTTTTTTTTTTGGTGCTAGGTTTCGATTTGATAAGGCTGATAGGAAGCGACTATTTAACATGATAAATGATCTTCCAACAGTATTTGAGGTTGTTACAGAGATAACCAAGAAACAAGGAAAGGCAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAATTCAAACTCTAAGTCTCTTTTGGTTTGTCAACTGCAGAGAGGTTCTGCGCCTCCAGGGAAGTATTCAAAAGCAATGCAATCAAAGGACGGGGATGAGGATGGTTTGGAAGAGGAAGATGACGAGGAGCATGGAGAGACTCTTTGTGGAGCGTGTGGAGAGAACTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTTCATGGAAAATGCGTGAAGATTACCCCTGCAAAGGCTGAGCATATAAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 786 0.4542 MDAAAHDNPRTVEEVFRDFNGRRAAVIKALTTDVQEFYQHCDPEKENLCLYGFPSEHWEVNLPADEVPAELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFFFGARFRFDKADRKRLFNMINDLPTVFEVVTEITKKQGKAKSSVSNHSSNKSNSNSKSLLVCQLQRGSAPPGKYSKAMQSKDGDEDGLEEEDDEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRARP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1377 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Apr5g1377 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 256 IPR013083 -
Apr5g1377 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 261 - -
Apr5g1377 261 PANTHER CPG BINDING PROTEIN 5 261 IPR045104 GO:0006355|GO:0042393
Apr5g1377 261 SMART PHD_3 207 255 IPR001965 -
Apr5g1377 261 MobiDBLite consensus disorder prediction 174 199 - -
Apr5g1377 261 Pfam PHD-finger 208 257 IPR019787 -
Apr5g1377 261 CDD PHD_AL_plant 207 257 IPR044104 -
Apr5g1377 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Apr5g1377 261 SUPERFAMILY FYVE/PHD zinc finger 197 258 IPR011011 -
Apr5g1377 261 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1377 Apr-Chr5 17956263 17959917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1377 3 260 Alfin-like Transcription Factor Family AT3G42790 70.155 1.01e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr5g1377 Alfin 4.6e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1377 - - mnt:21387296 416.772