Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1375 ATGGATAACGCGGGGTTTGTTCCGTCTCATGACACCAACATTTTCGATTGGAGAAACGCCACACTTGCCCACTTTACTACAAATGATGCACCCAATTCACTGTCCCAACAACAAAATACTCCTTATGGACTTGAACCCTTTATGGACCCAATCATCCCACAGGGTAATCTTCCCTTTGCGGATCCCATCATCCAACAAGGTAACGTTCCCTTTATGGATCCAATGGTCCAAGATCACTTCATGCACAATAATGGAGGAACAGGGAACTTTCTAGAGGGTCCATCGTTGCATGACCCTGAAAATGAGACTTTGGAGTTCAACGAAGTGTTACCACTTTCGCATTGGCCCCAATCACCAGCCCCATTCTTTTGCAGTTGCTGTCATGTTTTGAGAGAAATAATTCACACCAATGGTACAAATTTTCAAAAGCTTGAGATTCATGGAACGCTCGGCTTGATTACCCATGCAATTCACCGTCAAAATATCACCGTGGCTGGTCCTAATAACGTTCAATATGAAATGATTGACTTTTGCTACAGAAACCCAGATGAAATTAGGACTTTCCTAATAAATTACTGCGCACAGCAAGCTTCATCAGGGTACGTTATTATGCAAGATCCATTGTCTACCTATTATGAGGCCCTCTGCACGGGACTGGACTGGACTGAAGATTTAAGTGATGAATGCATCGATTTGAATCCTAATAATTCAGCAAATGAGATGGAGCAAGAGGCTGAGAATGGAACGGGTACTAAAATTTCGCTGGCGTCACAGAGGGAGAGAGCAGGGAGGATGGAATTGAGTGATTTCAGCGATTACTTTCATCTACCAATTGAGGAAGCATCGAGACAAGTGAGTTTATGCCCGACGGTGGTGAAGAAAATATGCCGCAGGGCAAAATTGAAACGATGGCCTTATAGAAAGGTGAAAAGCATTACGAAGCAGATCGGATTACTGAGAAGAGCACTTGGGTCAGAAGATGCAGTGTCAAGGGTAAGAACTCAAGAGGAAATTAACAGACTTGTACAGCAAATGATTCGCCATTGTGGTGGAGTTCTCCCAACAGCAATAGATATCAACCGATTGTAA 1089 0.4343 MDNAGFVPSHDTNIFDWRNATLAHFTTNDAPNSLSQQQNTPYGLEPFMDPIIPQGNLPFADPIIQQGNVPFMDPMVQDHFMHNNGGTGNFLEGPSLHDPENETLEFNEVLPLSHWPQSPAPFFCSCCHVLREIIHTNGTNFQKLEIHGTLGLITHAIHRQNITVAGPNNVQYEMIDFCYRNPDEIRTFLINYCAQQASSGYVIMQDPLSTYYEALCTGLDWTEDLSDECIDLNPNNSANEMEQEAENGTGTKISLASQRERAGRMELSDFSDYFHLPIEEASRQVSLCPTVVKKICRRAKLKRWPYRKVKSITKQIGLLRRALGSEDAVSRVRTQEEINRLVQQMIRHCGGVLPTAIDINRL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1375 362 PANTHER RWP-RK DOMAIN PROTEIN 61 351 - -
Apr5g1375 362 PANTHER PROTEIN RKD4 61 351 IPR044607 GO:0003700
Apr5g1375 362 ProSiteProfiles RWP-RK domain profile. 252 332 IPR003035 -
Apr5g1375 362 Pfam RWP-RK domain 265 312 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1375 Apr-Chr5 17949570 17951252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1375 265 325 NLP Transcription Factor Family AT4G24020 34.426 3.80e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr5g1375 RWP-RK 7.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1375 - - aprc:113850591 678.707