Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1371 ATGGATGCTATTAAGGATAACGGTGAAGTGAGCATGGCGGAAAAGAAAAGAGAAGTGGTGGTGGCGATTCCAAATGAGGGTGGTGGTGAATCTTTATCTTCGAAGCTGCAGAGTAGGGTGAATTCGCCTCACAGAACATGTACTGACAACGAGGTTGTTGCAAAGTCGCCACCTTTGAATTGTGCTTCCCCCGAAATAAGGTTCGTTCCCAGCCCAAATAAGCCCCCCAAAGTTCCCACTTCCAATGCCAACCTCACCAACAGAAAATCATTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGATTTGGAGAACAACCTTATCCAGTTGATGGGTCTGTTTTGGAAGAGAATGGTACATCAACTTTGCAAGAACAATTGGGTGTTAGTTCACCGTATAAAGCATCACCTAATAACAACAAGCCAGGGACGTTTAATAGAACTGTCTCCATCACTTCCGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCTGGGCATGCTGAGGAGGATTTTGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAGCAAGCGTAAGAGATTGACTACTAAGGTTTTGATTGAGTGGTTTGTGTTTGTGTGCATTGCGGGTAGCTTGCTGGCTAGTTTAACTGTTGGGAAACTGAAAAGGACTGAGATTTGGAGTTTGGCGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGTATGTTGGTTACCAAGTGGTTTATGCTCATTGTTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTACATGGACTGAAGAAATGTGTCCAGGTCTTCATTTGGATTGGTTTGGTTCTTCTCACATGGGTGCTTTTCATTAACCATGGGGTCGACCGATCTGAATTGGCCACAAAAATTTTGAATGGGGTGACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTCCTGTGGTTTGTGAAGACACTGTTGCTGAAGATCTTGGCATCAACTTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCAATCTTTCATCAGTACATTTTGCAGACTCTCGCTGGCCCTCCACTTATAGAAGAGGCTGAGAAAGTTGGGGCATCACAAAGTGTTGGTCATTTTAGTTTCAGGAGTACAGATGGTAGAGGTGGCACAAAGAAAAAGGCTATTGATATCGCGAAGCTTCACCGGATGAAGCGGGAGAAAGTTTCTGCGTGGACTATGAAGATTTTGGTGGATGCAGTGACAAATTCAGGGCTGTCCACAATCTCTAATGCTCTAGATGAAAGTTTTGAGGATGGAGAAAATGATCAAACTGATAAAGAGATTACGAATGAGATGGAAGCAATTGCTGCTGCCTATTACATTTTCATGAATGTTGCTTCCCCTGGTTGCACGTACATTGACGAGGACGAACTCCGGAGGTTCATGATTAAGGAAGAAGTGCGTGTGGTATATCCCCTACTGACTGAAGCTGAAACGGGGCAAATTACCAGAAAATCTTTAACCAACTGGCTGTTGAAGGTATATCAAGAACGCAAAGCATTGGCACATGCCTTAAGTGACACCAAAACAGCTGTAAAACAACTGAACAAGCTTGTCACAGGAATTCTAGTAGTGGTGACCATAATAGTATGGCTTCTACTAATGGAGATTGCAACAACAAAAGTACTTTTATTCCTCTCATCGCAGCTATTACTTGTAGGTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTATCATCTTCGTGTTTGTAATGCACCCATTTGATGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTTCTTGCCACAAAACCGATTAGCAATTATTACCGAAGCCCAGATATGGGTGATGGTGTAGAGTTCTCAATTGATTTTACGACACCAGCAGAGAAGATTGGGGCACTCAAAGAAAAAGTAAAGAGGTACTTGGAGAGAAATCCACAATACTGGTATCCTAATCATGGCTTAGTAGTGAAGGAGATTGAAAATGTAAACAAGATCAAGATGGGTCTCTATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGGAGAACTGAACTGGTTATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATATAACCTTCTTCCTCAAGGTGTTCACCTCAGACATATGGAACCAGACACGAGTGTACTCAATAGATGA 2301 0.4155 MDAIKDNGEVSMAEKKREVVVAIPNEGGGESLSSKLQSRVNSPHRTCTDNEVVAKSPPLNCASPEIRFVPSPNKPPKVPTSNANLTNRKSFTRSVYSKPKSRFGEQPYPVDGSVLEENGTSTLQEQLGVSSPYKASPNNNKPGTFNRTVSITSVITPKTPLMASPGHAEEDFDEIIYKKVELSKSKRKRLTTKVLIEWFVFVCIAGSLLASLTVGKLKRTEIWSLAFWRWCVLVMVTFCGMLVTKWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQVFIWIGLVLLTWVLFINHGVDRSELATKILNGVTWTLVSLLIGAFLWFVKTLLLKILASTFHVKSFFDRIQESIFHQYILQTLAGPPLIEEAEKVGASQSVGHFSFRSTDGRGGTKKKAIDIAKLHRMKREKVSAWTMKILVDAVTNSGLSTISNALDESFEDGENDQTDKEITNEMEAIAAAYYIFMNVASPGCTYIDEDELRRFMIKEEVRVVYPLLTEAETGQITRKSLTNWLLKVYQERKALAHALSDTKTAVKQLNKLVTGILVVVTIIVWLLLMEIATTKVLLFLSSQLLLVGFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDGVEFSIDFTTPAEKIGALKEKVKRYLERNPQYWYPNHGLVVKEIENVNKIKMGLYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQGVHLRHMEPDTSVLNR* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1371 766 MobiDBLite consensus disorder prediction 25 59 - -
Apr5g1371 766 Gene3D - 598 647 IPR023408 -
Apr5g1371 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 14 755 - -
Apr5g1371 766 Pfam Mechanosensitive ion channel 539 744 IPR006685 GO:0016020|GO:0055085
Apr5g1371 766 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Apr5g1371 766 PIRSF Memb_At2g17000 10 766 IPR016688 -
Apr5g1371 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 755 IPR016688 -
Apr5g1371 766 MobiDBLite consensus disorder prediction 30 49 - -
Apr5g1371 766 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1371 Apr-Chr5 17914481 17918633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1371 54 754 Mechanosensitive Ion Channel Family AT5G12080 60.907 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1371 K22048 - gmx:100803107 1315.83