Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1360 ATGGCTACTCATCTCTTCACCCTTTCTCTTTCCCCGCAACCCAAACTCTGCTTCAATTATGCACCCAATCATGCCGTCCACTTCAGTTCTCTTCTCCCAACAAAACGGCGTCGCAGCCGCAATCGCCACAGCCGTCAGATTCTCCGGCCACCATTCTTCGTATCGAGTTCCTTCAGGACTGAGATTGGATCGGCGGAATCAGATCTCCTTCAAGGCCAGGGACAGAGCAAAGACTCGCCAGTTTTACTTGACGTCAGTGGTATGATGTGCGGTGCTTGCGTCTCCCGAGTCAAAAACATCTTATCCGCCGACGACCGTGTCGACTCAGTCGTGGTCAACATGTTGACTGAGACCGCCGCTGTCAAATTGTGGCGACTCGAGGAGGAACCAGCGAGTGTTGCTGAGAGCCTCGCTCGGAGATTGAGCGATTGCGGATTCCCAACGAAGAGTAGGGCGTCGGGTTTAGGAGTGGCGGAAAACGTGAGGAAGTGGAAGGATTTGGTGAAGAAGAAGGAGGAACTGGTCGCCAGGAATCGAAGCCGTGTCGCATTCGCTTGGACTTTGGTCGCATTGTGCTGTGGCTCGCACGCTTCGCATATTTTTCATTCTTTAGGAATTCACATTGCTCATGGACCGCTTTTGGAAATTCTTCATAATTCGTACGTGAAAGGTGGTTTAGCTTTGGGGTCTTTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGATCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTATAGCCGCTTTCATCATTAGTTTGATCTCGTTACTTAACCCTGGCCTAGCGTGGAATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTTCACTGATATCTACTCAGTCAAGACTTGTGATTACTCCAACAGAAGGTTCGCCATCTACTGACACTGTGCTTTGCTCTGACGCAATTTGTGTTGAAGTCCCTACTGATGATGTTCGAGTAGGTGACTCAGTGTTGGTGCTGCCTGGAGAAACTATCCCTATAGATGGAAGGGTCATTTCAGGAAGAAGCGTTGTAGATGAATCAATGCTAACAGGTGAATCACTTCCTGTATTTAAGGAAAAAGGCCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCGATAGCAGGGCCGTTTGTATACAGTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTCGTTGGATCACACATATTTCCTGATGTTTTGCTCAATGATATTGCTGGTCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAGCTCTCTGTAGATGTATTGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCCACACCGACAGCAATCCTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGGGATGTGCTAGAACGCTTGGCCAGCATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACCCAAGGAAAACCGGTTGTGTCTGCCATAGGCTCTATCGATTATGGGGAGTCAGATATTCTTCGGATTGCTGCTGCAGTGGAGAAAACTGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGATTTGGTCCTTCCAGTTACAAAAGGGCAATTAGTTGAACCCGGTTTTGGAACTTTAGCAGAAATAGATGGGCGTTTGATTGCAGTTGGGTCTTTAGAGTGGGTTCATGATCGCTTCCAGAAAAGAATGAACCCATCTGATTTGACAAATCTGGAACACAGTTTGATGAATCATTCATTGAATAAATCTTCAAAGTATTCGAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACGTTGTGCGCGATGATGCTGAATCTACTGTCATGAGGCTCAAGCAGAAGGGGATTAAAATGGTCCTGCTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAATAGCAGAGAGAATTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCGCAGCAGAAATCTAGATTTATTTCATCTCTGAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATTATACTTCTGGGGAACAGAATTTCACAAGTTGTTGATGCACTAGACCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTAGCCTATAATGTTGTTGCCATTCCCATAGCGGCTGGTGTGTTACTTCCCCAATTTGACTTTGCTATGACACCGTCACTTTCAGGAGGATTGATGGCTCTGAGCTCCATCTTTGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGACCTCCAGAAAGAATGCAAAGTGCTGGCCAGTGGCTTGTGGCCTGACCTACACTTAA 2691 0.4601 MATHLFTLSLSPQPKLCFNYAPNHAVHFSSLLPTKRRRSRNRHSRQILRPPFFVSSSFRTEIGSAESDLLQGQGQSKDSPVLLDVSGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLWRLEEEPASVAESLARRLSDCGFPTKSRASGLGVAENVRKWKDLVKKKEELVARNRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPLLEILHNSYVKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISLISLLNPGLAWNASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITPTEGSPSTDTVLCSDAICVEVPTDDVRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTQGKPVVSAIGSIDYGESDILRIAAAVEKTASHPIAKAIVNKAESLDLVLPVTKGQLVEPGFGTLAEIDGRLIAVGSLEWVHDRFQKRMNPSDLTNLEHSLMNHSLNKSSKYSKTVVYVGREGEGIIGAIAISDVVRDDAESTVMRLKQKGIKMVLLSGDREEAVATIAERIGIENDFVKASLSPQQKSRFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNRISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQTSRKNAKCWPVACGLTYT* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1360 896 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Apr5g1360 896 Pfam haloacid dehalogenase-like hydrolase 545 775 - -
Apr5g1360 896 PRINTS P-type cation-transporting ATPase superfamily signature 382 396 - -
Apr5g1360 896 PRINTS P-type cation-transporting ATPase superfamily signature 549 563 - -
Apr5g1360 896 PRINTS P-type cation-transporting ATPase superfamily signature 684 695 - -
Apr5g1360 896 PRINTS P-type cation-transporting ATPase superfamily signature 706 716 - -
Apr5g1360 896 PRINTS P-type cation-transporting ATPase superfamily signature 761 780 - -
Apr5g1360 896 SUPERFAMILY HAD-like 547 869 IPR036412 -
Apr5g1360 896 Gene3D - 305 436 - -
Apr5g1360 896 SUPERFAMILY Calcium ATPase, transmembrane domain M 282 543 IPR023298 -
Apr5g1360 896 ProSitePatterns E1-E2 ATPases phosphorylation site. 551 557 IPR018303 -
Apr5g1360 896 Gene3D - 560 692 IPR023299 GO:0000166
Apr5g1360 896 SUPERFAMILY Calcium ATPase, transduction domain A 342 432 IPR008250 -
Apr5g1360 896 Pfam Heavy-metal-associated domain 83 146 IPR006121 GO:0046872
Apr5g1360 896 CDD HMA 83 147 IPR006121 GO:0046872
Apr5g1360 896 SFLD p-type atpase 532 814 IPR044492 -
Apr5g1360 896 SFLD C1.7: P-type atpase like 532 814 - -
Apr5g1360 896 SUPERFAMILY HMA, heavy metal-associated domain 81 131 IPR036163 GO:0046872
Apr5g1360 896 Pfam E1-E2 ATPase 335 529 - -
Apr5g1360 896 PANTHER ATP7, ISOFORM B 78 874 - -
Apr5g1360 896 Gene3D - 540 812 IPR023214 -
Apr5g1360 896 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 338 853 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr5g1360 896 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 253 872 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr5g1360 896 Gene3D - 73 152 - -
Apr5g1360 896 CDD P-type_ATPase_HM 181 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1360 Apr-Chr5 17842058 17850445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1360 244 873 Primary Pumps ATPases AT1G63440 37.441 1.38e-117 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1360 K17686 - gmx:100127402 1512.66