Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1359 ATGCCCATGGCATTCCGGTTGGGAGTTGGACTCCACATTCTGCTTTTTCTCGTTTGTTTGAATTCAATCAGTTCGGTGAATAAAGACGACGGAGCGACGTTGTTGGAGATTAAGAAATCGTTGAGGGATGTGGATAACGTTCTATATGACTGGTCAGACTCACCTTCATCAGATTATTGTGCGTGGAGAGGGGTCACATGTGATAATGTTACCTTCAATGTGGTTGCACTCAATCTTTCGGGATTGAATCTTGAGGGCGAGATTTCACCTGCTATTGGGAGTCTTAACAGCTTGGTTTCTATTGATCTCAAGGAAAATCGTCTAACTGGCCAGATTCCAGATGAGATTGGTGATTGTTCTTCTTTGAAAAGCCTGGACTTGTCATTTAATGATATTCGAGGAGATATACCATTTTCAATTTCCAAGACGAAGCAACTGGAAAATCTCATTTTAAAAAATAACCAGCTAATTGGACCAATTCCTTCAACTCTGTCTCAGATTCCTAACTTGAAAATTCTAGATCTGGCACAAAATAATCTTAGCGGGGAGATACCGAGACTTATATACTGGAATGAAGTTTTGCAATATCTTGGTTTGCGAGGTAACAATTTGGTCGGCTCACTTTCTCCTGATATGTGCCAGTTAACTGGATTGTGGTATTTTGATGTGAGAAACAATAGCTTAACGGGCAGTATTCCTGATAACATAGGCAATTGTACTGCCTTCCAGGTCTTGGATTTATCGTACAACAAGCTAACTGGAGAGATACCATTCAATATTGGGTTTCTGCAAGTAGCAACCCTGTCATTGCAGGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCACTTGCTGTCTTAGATTTGAGTTGTAACATGTTGAGTGGACCAATACCTCCTATTTTGGGAAATTTGACCTATACCGAAAAATTGTATTTGCATGGAAACAAGTTGACTGGCCTCATCCCTCCAGAGCTAGGAAATATGACCAAGCTTCATTATTTGGAATTGAATGATAACCATTTAAGTGGACATATCCCACCCGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCTAATAACAGCCTTGAAGGTCCAATTCCCAATAATCTAAGCTCGTGTAAAAGCCTTAACAGCCTCAATGTGCATGGGAATAAGTTGAGTGGAACAGTCCCCTCAGCTTTTCAGAGCTTGGAGAGTATGACCTATCTGAATCTTTCGTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTTTCACGGATTGGCAATTTGGATACGTTGGATATTTCAAATAATAATATAAGTGGTTCTATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTAAAGCTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGACATTGATCTTTCAAATAATCAACTCTCTGGTTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATGATATCCCTGAGACTACAAAAGAACGAATTATCTGGGGATGTGTCTTCACTTGTGAATTGCCTTAGTCTTTCTCTGCTCAATGTCTCTTATAACAACCTAGTTGGTTTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCCCTTGACAGTTTCATTGGGAACCCTGGTCTGTGTGGCTATTGGCTGAATTCAGCTTGTCATGGATCTCACCCTACAGAAAGAGTTACGTCGTCTAAGGCAGCTATCCTAGGAATTGCTCTTGGTGCCCTTGTGATTCTTCTTATGATATTACTGGCAGCTTGCCGACCACAAAATCCAGCTCCTTTCCCTGACGGATCTTTTGACAAACCAGTTAACTATTCACCTCCGAAGCTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTACAAATGTGTTCTGAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTGTATTCCCACTATCCGCAATGCTTGAAAGAATTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGGTACTCTTTTTCTCCACATGGAAACCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACCAAGAAGAAAAAGCTCGAGTGGGATCTTCGTCTAAAAATAGCACTTGGGGCAGCTCAAGGGCTAGCTTATCTACACCACGATTGTAGTCCCCGTATCATTCACAGAGATGTGAAATCATCTAATATTTTATTAGACAAAGACTTTGAGCCCCATCTCACCGATTTTGGCATTGCCAAAAGTCTATGCCCCTCCAAGTCCCACACTTCAACTTACATAATGGGCACAATTGGCTATATAGATCCTGAGTATGCTAGAACTTCCCGGCTTACTGAGAAGTCTGATGTGTATAGCTATGGTATCGTATTACTTGAGCTGCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTGCATCATTTGATTTTGTCGAAGACAACTAATGATGCCGTAATGGAAACCGTTGATCCGGATATTACTGCCACATGCAAGGACGTGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTCTTATGTACAAAGAAGCAGCCAGTTGATAGGCCTACAATGCATGAGGTAACACGCGTGCTAGGAAGTCTTGTGCCATCCAACGCCACCCAAAAACAATCCACCCCAATCCAAACACTACCTGATTCACAGCCATCTGCTAAAATGCAATGCTACAAAGATGAATATGCAAATCTTAAAACTCCACACTTGGTGAATTGCCCATCCATGAGCTCATCTGATGCCCAACTCTTCCTCAAGTTTGGTGAAGTCATATCTCAAAACAGTGAGTGA 2964 0.413 MPMAFRLGVGLHILLFLVCLNSISSVNKDDGATLLEIKKSLRDVDNVLYDWSDSPSSDYCAWRGVTCDNVTFNVVALNLSGLNLEGEISPAIGSLNSLVSIDLKENRLTGQIPDEIGDCSSLKSLDLSFNDIRGDIPFSISKTKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPDNIGNCTAFQVLDLSYNKLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNSLEGPIPNNLSSCKSLNSLNVHGNKLSGTVPSAFQSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNISGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNMISLRLQKNELSGDVSSLVNCLSLSLLNVSYNNLVGFIPTSNNFSRFSLDSFIGNPGLCGYWLNSACHGSHPTERVTSSKAAILGIALGALVILLMILLAACRPQNPAPFPDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSFSPHGNLLFYDYMENGSLWDLLHGPTKKKKLEWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTTNDAVMETVDPDITATCKDVGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPSNATQKQSTPIQTLPDSQPSAKMQCYKDEYANLKTPHLVNCPSMSSSDAQLFLKFGEVISQNSE* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1359 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Apr5g1359 987 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 12 974 - -
Apr5g1359 987 ProSiteProfiles Protein kinase domain profile. 652 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1359 987 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515
Apr5g1359 987 Gene3D Phosphorylase Kinase; domain 1 626 727 - -
Apr5g1359 987 Pfam Leucine rich repeat 364 419 IPR001611 GO:0005515
Apr5g1359 987 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Apr5g1359 987 SMART serkin_6 652 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1359 987 SMART LRR_typ_2 478 501 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 167 191 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 406 430 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 334 358 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 454 477 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 95 119 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 215 239 IPR003591 -
Apr5g1359 987 SMART LRR_typ_2 382 405 IPR003591 -
Apr5g1359 987 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Apr5g1359 987 Gene3D Ribonuclease Inhibitor 191 300 IPR032675 -
Apr5g1359 987 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Apr5g1359 987 SUPERFAMILY Protein kinase-like (PK-like) 629 918 IPR011009 -
Apr5g1359 987 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 974 - -
Apr5g1359 987 SUPERFAMILY RNI-like 212 544 - -
Apr5g1359 987 SUPERFAMILY L domain-like 28 263 - -
Apr5g1359 987 ProSiteProfiles Leucine-rich repeat profile. 432 455 IPR001611 GO:0005515
Apr5g1359 987 ProSitePatterns Protein kinases ATP-binding region signature. 658 681 IPR017441 GO:0005524
Apr5g1359 987 Gene3D Ribonuclease Inhibitor 301 574 IPR032675 -
Apr5g1359 987 Gene3D Transferase(Phosphotransferase) domain 1 728 940 - -
Apr5g1359 987 Pfam Protein kinase domain 655 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1359 Apr-Chr5 17821699 17828996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1359 97 986 Receptor kinase-like Gene Family AT5G07180 64.983 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Apr5g1359 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1359 K20718 - gmx:100804875 1738.01