Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr5g1349 | ATGGATTCATCAGACCAAAGTAAAAAGCGAAACTTCGATCAATTATACTCAAAGCCCCTTGAAGCTGACAATTCACAAACTGAAGAATCACTTTCTTCTAACATTGACCCCAGAAGTTATCAATTAGAAGTGTTTGAAGTTGCAAGAAGGAGGAACACAATAGCAGTGTTGGATACAGGCTCTGGTAAAACCTTGATAGCTGTAATGCTTATAAAGGAGGTTGGTCATGCTATCAAGACTTGTGGTGTAAAGAAGCTAATTATTTTCTTAGCTCCAACCGTTCATCTTGTAAATCAGCAATTCAAGAATATAAAATATCTAACAGATTTTCAAATTGAGGAATTCTACGGGGCTAAAGGAGTCGATACATGGAATTTAAAGACTTGGGAAAAGGAGATTAGTAACAATGATGTATTTGTTATGACACCCCAAATTCTTTTAGATGCCTTAAGAAAAGCATTCTTGAATATAGAAATGATATGCTTGATGATTATTGACGAATGTCATAGAGCCACTGGTAACCATCCCTATGCAAAAATAATGAAGGAATTTTATCACCAAGCCAACGAAAAGCCAAAGATTTTTGGGATGACAGCATCTCCAGTGGGTAAAAAAGGTGTTTCCTCTGTTATGAATTGTGAGAGTCAAATATCAGAACTAGAAAACATCTTGGATTCCCGGAGATATACTGTTGAAAATCGGACAGAGATTGATGTATTTATCCCATCTGCAAAAGAGAGTTGTAGATATTATGATCAAGCACGATGTCCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTCTGATCCATTGTTATCAGAATTTCAAAGTAAATTTAAGACGTTGCATCAGCGGATGTCCAATGAAGTTGCTAAGATTTTACATTGTCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAAATTGAGGGAGAATGTGAAATTTATAGAAAAGGTTATCTTCAGTTCATAAATTACATTGAAGAAGTAACCAAAATTATCGAAGAATCCCTCCATCTTGCTGATATACAGATTTTGGAGGTTGAATTTGACTTTTCCAAGGCAGTAGAGTTGGGATACATATCTCCAAAATTACTTGAACTTATTAGAATCTTCCAGTCATTTGGAGAATCTAGTCAGATGTTGTGCCTTATTTTTGTTGATAGAATCATTGCAGCTAAGGTGATTGAAAGATTTGTGAAGAAAGTTTCCCAGATCTCTCATTTCACAGTTTCGTATTTAACTGGAAACAGTACATCGGTTGATGCACTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGTGCTGGAAAGGTCAATCTATTATTTACCACTGATGTACTAGAGGAAGGAATTCATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCGAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAAGCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACTCTTTCACATCATCAGGAGTGAGCGCTCTATGACTGATGCAGCTATTAATAAAGACCGTGAATCTAGTTTAAGAGCATTTACAGTTGGGAAAACAAATGTTTACTATGTGAATTCTACTGGAGCATCAGTCACGTTAGATTCAAGTGTTTGTTTTATAAATCGATACTGTGAAAAGCTCCCACGAGATAAGTACTCCTGTGCAAAGCCCAGTTTTGAGTTTCTGCCTATGGAAGGGTGTTACCAGTGTAAATTAATATTACCACCTAATGCAGCATTCCAAACAATAATTGGTCCTTCAGAAAAAGATATGCGTTCAGCAAAGCATCTTGTATGTTTTGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGAACATCTTGTCCCATTCAGTGAAGATCCTTTGGAAGCTGACCATATCACGAAAAACAAAGAATCAAGTTCTGGTGCAGGAACCACAAAAAGGAAGGAGTTACATGGCACAGCTAGCATTCGTGCATTAAGTGGCACATGGGGTGACAGATTCGATGGAGTCAAATTTCATGCCTATAAATTTGACTTCACTTGTAGTATTGTTAATGAAATGTACTCTGGGTTTGTTCTTCTGATTGACTCGAGGCTTGATGATGATGTTGGAAATATGGAATTAAATCTTTATTTGGTCTCAAAGATTGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGAATGCTGAACAGATGATGAAAGCGAAATGCTTCCATGAACTTTTTTTCAACGGTTTGTTTGGGAGGTTGCTTGTTAAATCTGAATCAGCAAGAGGGAAGAGGGAATTTTTACTTCAAAAAGACACAAAATCATTGTGGAGCCCAAAAAACTTATATTTGCTTCTACCTCTTGAGAAATTGAATGATGTTTGTCAGGGATCTTTGCCAATAAATTGGTCTGCAATCAATTCTTCTGCTTCTGCTATTGAATTCTTAAGGAGGAAATTTTCTTTGGATGCTGGAAACTCTGATGATAGCAGCACAATTACATCACCTAATGATAGCAGTTCATCAGAGATGGAATGTGCAGGCACAAACAAGATTCACTTTGCTAATTGTGTGGCTGATGCTAATAATATAAAAGACACAGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATGGACAGTAAACTATCTGCTGAAAGTCCTTTCGATGGAAACAAAGAAAAATCGAAGGAAAGCATAACCTTCTCAAATTATTTCAGCCAAAGGTATGGGATTACACTGAGACACCCAAGACAGCCTTTGTTACGAATGAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTCTATGAGGAAGCAGATGATAGGTCATCACCATCTGGCCCGGTAACCTCAAAGGTGCCTGCTCATGTTCACATTCCACCTGAGCTTCTATGTGTTCTTGATGTTAAAAGTCTTGTGTTGAAGTCACTGTATTTGTTGCCATCTCTGATGTACCGTATTGAATCTTTCATGTTGTCCAGTCAACTTAGAGAAGAGATAGATGGTCAAACTAGCAATTTCAAGATACCTTGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAGAAGTTTTCAATGGAACGCCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCAAAGCGATCATGGGCTGTTTGTAATTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATACATCAGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGTGTTCTATACACCCTGTTTGTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGTAAAATTCTATACTGAAAATCCAAAAGTTGTGGTTGGTAAATTCTGCGACAGGGGTCACCGCTACATGTGCTCAAAGACTATTGCTGACTGTGTTGAAGCTTTGATAGGAGCTTACTATGTGGGTGGTGGACTTTTTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATGCTGAGCTAGAACTATCCTTGGTTGACGAAGCCATCACTGCTGCGTCTCTGCACGCATATGTGCCAAAAGTAAGTGAGATCAAAGGCCTTGAAAAGAAAATTGGGTACGAATTTTCTGTCAAGGGACTCTTACTGGAGGCCATCACACATTTATCTGAGACAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCGGTATTAGACCTGCTAATCACATGGCATCTTTATCAGAGTCACAGAGATGTTGATCCAGGAGTGTTGACAGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACAAAACCTTCACCACCACCTTCTACATAGGTCAGGATTTTTACTGAGCCAGATAGCAGAATATGTGAAGATCATTTCTGAATCAGACTCCAGATCACTCCCTGGCATTAAAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAAACTCAATCTTGATGAAGTGTGGAAACTTTTCTATCCTCTATTATCACCCATTGTTACTCCCGATAAACTTGAACTGCCTCCATTTCGTGAGTTGAATCAATTATGTGACTCACTCGGGTATTTTGTAAAAGTAAAAGAAAAATGTGAAAAGAAGGGATCTGTGGAGCGTATTATGCTTAGTGTACAGCTGCCAAATGCCCTATTGGTTCAAGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCAGCTTTTCATTTGCTTAAGGAACTTGAGAAGAGGGGAATTTCATATTGTAGTAGTGTGTCCAAGGGAAAAAGAGATAATCCCGACCAAATCCGTGATTCATCTCTTCTCAAAATGGATTCTAGTATTTCCCATTCTCTAACTGAAGAACATTCCTCAAATCCAGCATTGCATAAAAGGCCCAGATTGGATGATACAAACTTAAGTGCGAGTGAAGTCTCTGGTTTTAGTGCTTCCATTCCAGTTATTTCATCAATTAATATGAAGAAGGGAGGACCCCGGACCACACTGTATGAACTGTGTAAGAAATTGCAGTGGCCAATGCCTGCATTTGATTCAACAGAACATAAAAGATCAATATTAGAATCTTGTGAAGGCTTGGAAGGAAGCAAGGGACTTAACTGTTTCATGTCAAAAATTACCTTGTGCATTCCAAATGATGATGATGTAGAATGCCAAGGAGAAGCTAGGAGTGATAAGAAGAGCTCATATGACTCTGCTGCAGTTCAAATGCTTTACAAGTTACAGCAACTCGGAAAACTAAAAATTGATGCTCCTAATTAA | 4950 | 0.3863 | MDSSDQSKKRNFDQLYSKPLEADNSQTEESLSSNIDPRSYQLEVFEVARRRNTIAVLDTGSGKTLIAVMLIKEVGHAIKTCGVKKLIIFLAPTVHLVNQQFKNIKYLTDFQIEEFYGAKGVDTWNLKTWEKEISNNDVFVMTPQILLDALRKAFLNIEMICLMIIDECHRATGNHPYAKIMKEFYHQANEKPKIFGMTASPVGKKGVSSVMNCESQISELENILDSRRYTVENRTEIDVFIPSAKESCRYYDQARCPALSLKPKIEALWFKSDPLLSEFQSKFKTLHQRMSNEVAKILHCLEDLGILCAYEAVKICHENFSKIEGECEIYRKGYLQFINYIEEVTKIIEESLHLADIQILEVEFDFSKAVELGYISPKLLELIRIFQSFGESSQMLCLIFVDRIIAAKVIERFVKKVSQISHFTVSYLTGNSTSVDALAPKRQKEILDSFRAGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFIVMLERGNLKQRNQLFHIIRSERSMTDAAINKDRESSLRAFTVGKTNVYYVNSTGASVTLDSSVCFINRYCEKLPRDKYSCAKPSFEFLPMEGCYQCKLILPPNAAFQTIIGPSEKDMRSAKHLVCFEACKKLHQMGALNEHLVPFSEDPLEADHITKNKESSSGAGTTKRKELHGTASIRALSGTWGDRFDGVKFHAYKFDFTCSIVNEMYSGFVLLIDSRLDDDVGNMELNLYLVSKIVKASVSSCGQVDLNAEQMMKAKCFHELFFNGLFGRLLVKSESARGKREFLLQKDTKSLWSPKNLYLLLPLEKLNDVCQGSLPINWSAINSSASAIEFLRRKFSLDAGNSDDSSTITSPNDSSSSEMECAGTNKIHFANCVADANNIKDTVVLAIHTGKIYCIIEMDSKLSAESPFDGNKEKSKESITFSNYFSQRYGITLRHPRQPLLRMKQSHNPHNLLFNFYEEADDRSSPSGPVTSKVPAHVHIPPELLCVLDVKSLVLKSLYLLPSLMYRIESFMLSSQLREEIDGQTSNFKIPCSLILEALTTLRCCEKFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSAKRSWAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQCSIHPVCCDCGLETLEVPLDVKFYTENPKVVVGKFCDRGHRYMCSKTIADCVEALIGAYYVGGGLFASLHVMKWLGIDAELELSLVDEAITAASLHAYVPKVSEIKGLEKKIGYEFSVKGLLLEAITHLSETELGIGCCYERLEFLGDSVLDLLITWHLYQSHRDVDPGVLTDLRSASVNNDNFAQVAVRQNLHHHLLHRSGFLLSQIAEYVKIISESDSRSLPGIKAPKALGDLVESIAGAILIDTKLNLDEVWKLFYPLLSPIVTPDKLELPPFRELNQLCDSLGYFVKVKEKCEKKGSVERIMLSVQLPNALLVQEGKGPNKKTAKGEAAFHLLKELEKRGISYCSSVSKGKRDNPDQIRDSSLLKMDSSISHSLTEEHSSNPALHKRPRLDDTNLSASEVSGFSASIPVISSINMKKGGPRTTLYELCKKLQWPMPAFDSTEHKRSILESCEGLEGSKGLNCFMSKITLCIPNDDDVECQGEARSDKKSSYDSAAVQMLYKLQQLGKLKIDAPN* | 1650 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr5g1349 | 1649 | SMART | helicmild6 | 411 | 498 | IPR001650 | - | |
Apr5g1349 | 1649 | MobiDBLite | consensus disorder prediction | 849 | 868 | - | - | |
Apr5g1349 | 1649 | SUPERFAMILY | dsRNA-binding domain-like | 1406 | 1478 | - | - | |
Apr5g1349 | 1649 | Pfam | Dicer dimerisation domain | 566 | 650 | - | - | |
Apr5g1349 | 1649 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1434 | 1473 | IPR014720 | - | |
Apr5g1349 | 1649 | CDD | RIBOc | 1252 | 1400 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | PANTHER | ENDORIBONUCLEASE DICER HOMOLOG 3 | 22 | 1642 | - | - | |
Apr5g1349 | 1649 | Gene3D | - | 370 | 537 | IPR027417 | - | |
Apr5g1349 | 1649 | ProSitePatterns | Ribonuclease III family signature. | 1272 | 1280 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | SMART | ultradead3 | 33 | 232 | IPR014001 | - | |
Apr5g1349 | 1649 | SUPERFAMILY | PAZ domain | 885 | 997 | IPR036085 | GO:0005515 | |
Apr5g1349 | 1649 | PANTHER | DICER-RELATED | 22 | 1642 | - | - | |
Apr5g1349 | 1649 | Gene3D | Dicer dimerisation domain | 560 | 657 | IPR038248 | - | |
Apr5g1349 | 1649 | SUPERFAMILY | RNase III domain-like | 1036 | 1214 | IPR036389 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | Gene3D | Ribonuclease III domain | 1024 | 1206 | IPR036389 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | Gene3D | Ribonuclease III domain | 1226 | 1399 | IPR036389 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | Gene3D | - | 1561 | 1639 | - | - | |
Apr5g1349 | 1649 | ProSiteProfiles | PAZ domain profile. | 887 | 998 | IPR003100 | GO:0005515 | |
Apr5g1349 | 1649 | Gene3D | paz domain | 871 | 996 | - | - | |
Apr5g1349 | 1649 | MobiDBLite | consensus disorder prediction | 1505 | 1524 | - | - | |
Apr5g1349 | 1649 | Pfam | Helicase conserved C-terminal domain | 390 | 495 | IPR001650 | - | |
Apr5g1349 | 1649 | SMART | PAZ_2_a_3 | 865 | 1022 | IPR003100 | GO:0005515 | |
Apr5g1349 | 1649 | Gene3D | - | 32 | 266 | IPR027417 | - | |
Apr5g1349 | 1649 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 565 | 655 | IPR005034 | GO:0016891 | |
Apr5g1349 | 1649 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Apr5g1349 | 1649 | ProSiteProfiles | Ribonuclease III family domain profile. | 1236 | 1379 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | SUPERFAMILY | RNase III domain-like | 1236 | 1399 | IPR036389 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | CDD | SF2_C_dicer | 374 | 506 | - | - | |
Apr5g1349 | 1649 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 378 | 536 | IPR001650 | - | |
Apr5g1349 | 1649 | Pfam | Type III restriction enzyme, res subunit | 42 | 201 | IPR006935 | GO:0003677|GO:0005524|GO:0016787 | |
Apr5g1349 | 1649 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 85 | 511 | IPR027417 | - | |
Apr5g1349 | 1649 | Pfam | PAZ domain | 884 | 1018 | IPR003100 | GO:0005515 | |
Apr5g1349 | 1649 | ProSiteProfiles | Ribonuclease III family domain profile. | 1023 | 1195 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Apr5g1349 | 1649 | SMART | riboneu5 | 1042 | 1215 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | SMART | riboneu5 | 1251 | 1402 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | CDD | DEXHc_dicer | 37 | 232 | - | - | |
Apr5g1349 | 1649 | Pfam | Ribonuclease III domain | 1272 | 1378 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | Pfam | Ribonuclease III domain | 1060 | 1194 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | CDD | RIBOc | 1042 | 1206 | IPR000999 | GO:0004525|GO:0006396 | |
Apr5g1349 | 1649 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 44 | 219 | IPR014001 | - | |
Apr5g1349 | 1649 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr5g1349 | Apr-Chr5 | 17733344 | 17750307 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr5g1349 | 422 | 495 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 37.838 | 1.58e-06 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr5g1349 | K11592 | - | gmx:100806831 | 2579.67 |