Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1349 ATGGATTCATCAGACCAAAGTAAAAAGCGAAACTTCGATCAATTATACTCAAAGCCCCTTGAAGCTGACAATTCACAAACTGAAGAATCACTTTCTTCTAACATTGACCCCAGAAGTTATCAATTAGAAGTGTTTGAAGTTGCAAGAAGGAGGAACACAATAGCAGTGTTGGATACAGGCTCTGGTAAAACCTTGATAGCTGTAATGCTTATAAAGGAGGTTGGTCATGCTATCAAGACTTGTGGTGTAAAGAAGCTAATTATTTTCTTAGCTCCAACCGTTCATCTTGTAAATCAGCAATTCAAGAATATAAAATATCTAACAGATTTTCAAATTGAGGAATTCTACGGGGCTAAAGGAGTCGATACATGGAATTTAAAGACTTGGGAAAAGGAGATTAGTAACAATGATGTATTTGTTATGACACCCCAAATTCTTTTAGATGCCTTAAGAAAAGCATTCTTGAATATAGAAATGATATGCTTGATGATTATTGACGAATGTCATAGAGCCACTGGTAACCATCCCTATGCAAAAATAATGAAGGAATTTTATCACCAAGCCAACGAAAAGCCAAAGATTTTTGGGATGACAGCATCTCCAGTGGGTAAAAAAGGTGTTTCCTCTGTTATGAATTGTGAGAGTCAAATATCAGAACTAGAAAACATCTTGGATTCCCGGAGATATACTGTTGAAAATCGGACAGAGATTGATGTATTTATCCCATCTGCAAAAGAGAGTTGTAGATATTATGATCAAGCACGATGTCCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTCTGATCCATTGTTATCAGAATTTCAAAGTAAATTTAAGACGTTGCATCAGCGGATGTCCAATGAAGTTGCTAAGATTTTACATTGTCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAAATTGAGGGAGAATGTGAAATTTATAGAAAAGGTTATCTTCAGTTCATAAATTACATTGAAGAAGTAACCAAAATTATCGAAGAATCCCTCCATCTTGCTGATATACAGATTTTGGAGGTTGAATTTGACTTTTCCAAGGCAGTAGAGTTGGGATACATATCTCCAAAATTACTTGAACTTATTAGAATCTTCCAGTCATTTGGAGAATCTAGTCAGATGTTGTGCCTTATTTTTGTTGATAGAATCATTGCAGCTAAGGTGATTGAAAGATTTGTGAAGAAAGTTTCCCAGATCTCTCATTTCACAGTTTCGTATTTAACTGGAAACAGTACATCGGTTGATGCACTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGTGCTGGAAAGGTCAATCTATTATTTACCACTGATGTACTAGAGGAAGGAATTCATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCGAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAAGCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACTCTTTCACATCATCAGGAGTGAGCGCTCTATGACTGATGCAGCTATTAATAAAGACCGTGAATCTAGTTTAAGAGCATTTACAGTTGGGAAAACAAATGTTTACTATGTGAATTCTACTGGAGCATCAGTCACGTTAGATTCAAGTGTTTGTTTTATAAATCGATACTGTGAAAAGCTCCCACGAGATAAGTACTCCTGTGCAAAGCCCAGTTTTGAGTTTCTGCCTATGGAAGGGTGTTACCAGTGTAAATTAATATTACCACCTAATGCAGCATTCCAAACAATAATTGGTCCTTCAGAAAAAGATATGCGTTCAGCAAAGCATCTTGTATGTTTTGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGAACATCTTGTCCCATTCAGTGAAGATCCTTTGGAAGCTGACCATATCACGAAAAACAAAGAATCAAGTTCTGGTGCAGGAACCACAAAAAGGAAGGAGTTACATGGCACAGCTAGCATTCGTGCATTAAGTGGCACATGGGGTGACAGATTCGATGGAGTCAAATTTCATGCCTATAAATTTGACTTCACTTGTAGTATTGTTAATGAAATGTACTCTGGGTTTGTTCTTCTGATTGACTCGAGGCTTGATGATGATGTTGGAAATATGGAATTAAATCTTTATTTGGTCTCAAAGATTGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGAATGCTGAACAGATGATGAAAGCGAAATGCTTCCATGAACTTTTTTTCAACGGTTTGTTTGGGAGGTTGCTTGTTAAATCTGAATCAGCAAGAGGGAAGAGGGAATTTTTACTTCAAAAAGACACAAAATCATTGTGGAGCCCAAAAAACTTATATTTGCTTCTACCTCTTGAGAAATTGAATGATGTTTGTCAGGGATCTTTGCCAATAAATTGGTCTGCAATCAATTCTTCTGCTTCTGCTATTGAATTCTTAAGGAGGAAATTTTCTTTGGATGCTGGAAACTCTGATGATAGCAGCACAATTACATCACCTAATGATAGCAGTTCATCAGAGATGGAATGTGCAGGCACAAACAAGATTCACTTTGCTAATTGTGTGGCTGATGCTAATAATATAAAAGACACAGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATGGACAGTAAACTATCTGCTGAAAGTCCTTTCGATGGAAACAAAGAAAAATCGAAGGAAAGCATAACCTTCTCAAATTATTTCAGCCAAAGGTATGGGATTACACTGAGACACCCAAGACAGCCTTTGTTACGAATGAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTCTATGAGGAAGCAGATGATAGGTCATCACCATCTGGCCCGGTAACCTCAAAGGTGCCTGCTCATGTTCACATTCCACCTGAGCTTCTATGTGTTCTTGATGTTAAAAGTCTTGTGTTGAAGTCACTGTATTTGTTGCCATCTCTGATGTACCGTATTGAATCTTTCATGTTGTCCAGTCAACTTAGAGAAGAGATAGATGGTCAAACTAGCAATTTCAAGATACCTTGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAGAAGTTTTCAATGGAACGCCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCAAAGCGATCATGGGCTGTTTGTAATTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATACATCAGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGTGTTCTATACACCCTGTTTGTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGTAAAATTCTATACTGAAAATCCAAAAGTTGTGGTTGGTAAATTCTGCGACAGGGGTCACCGCTACATGTGCTCAAAGACTATTGCTGACTGTGTTGAAGCTTTGATAGGAGCTTACTATGTGGGTGGTGGACTTTTTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATGCTGAGCTAGAACTATCCTTGGTTGACGAAGCCATCACTGCTGCGTCTCTGCACGCATATGTGCCAAAAGTAAGTGAGATCAAAGGCCTTGAAAAGAAAATTGGGTACGAATTTTCTGTCAAGGGACTCTTACTGGAGGCCATCACACATTTATCTGAGACAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCGGTATTAGACCTGCTAATCACATGGCATCTTTATCAGAGTCACAGAGATGTTGATCCAGGAGTGTTGACAGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACAAAACCTTCACCACCACCTTCTACATAGGTCAGGATTTTTACTGAGCCAGATAGCAGAATATGTGAAGATCATTTCTGAATCAGACTCCAGATCACTCCCTGGCATTAAAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAAACTCAATCTTGATGAAGTGTGGAAACTTTTCTATCCTCTATTATCACCCATTGTTACTCCCGATAAACTTGAACTGCCTCCATTTCGTGAGTTGAATCAATTATGTGACTCACTCGGGTATTTTGTAAAAGTAAAAGAAAAATGTGAAAAGAAGGGATCTGTGGAGCGTATTATGCTTAGTGTACAGCTGCCAAATGCCCTATTGGTTCAAGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCAGCTTTTCATTTGCTTAAGGAACTTGAGAAGAGGGGAATTTCATATTGTAGTAGTGTGTCCAAGGGAAAAAGAGATAATCCCGACCAAATCCGTGATTCATCTCTTCTCAAAATGGATTCTAGTATTTCCCATTCTCTAACTGAAGAACATTCCTCAAATCCAGCATTGCATAAAAGGCCCAGATTGGATGATACAAACTTAAGTGCGAGTGAAGTCTCTGGTTTTAGTGCTTCCATTCCAGTTATTTCATCAATTAATATGAAGAAGGGAGGACCCCGGACCACACTGTATGAACTGTGTAAGAAATTGCAGTGGCCAATGCCTGCATTTGATTCAACAGAACATAAAAGATCAATATTAGAATCTTGTGAAGGCTTGGAAGGAAGCAAGGGACTTAACTGTTTCATGTCAAAAATTACCTTGTGCATTCCAAATGATGATGATGTAGAATGCCAAGGAGAAGCTAGGAGTGATAAGAAGAGCTCATATGACTCTGCTGCAGTTCAAATGCTTTACAAGTTACAGCAACTCGGAAAACTAAAAATTGATGCTCCTAATTAA 4950 0.3863 MDSSDQSKKRNFDQLYSKPLEADNSQTEESLSSNIDPRSYQLEVFEVARRRNTIAVLDTGSGKTLIAVMLIKEVGHAIKTCGVKKLIIFLAPTVHLVNQQFKNIKYLTDFQIEEFYGAKGVDTWNLKTWEKEISNNDVFVMTPQILLDALRKAFLNIEMICLMIIDECHRATGNHPYAKIMKEFYHQANEKPKIFGMTASPVGKKGVSSVMNCESQISELENILDSRRYTVENRTEIDVFIPSAKESCRYYDQARCPALSLKPKIEALWFKSDPLLSEFQSKFKTLHQRMSNEVAKILHCLEDLGILCAYEAVKICHENFSKIEGECEIYRKGYLQFINYIEEVTKIIEESLHLADIQILEVEFDFSKAVELGYISPKLLELIRIFQSFGESSQMLCLIFVDRIIAAKVIERFVKKVSQISHFTVSYLTGNSTSVDALAPKRQKEILDSFRAGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFIVMLERGNLKQRNQLFHIIRSERSMTDAAINKDRESSLRAFTVGKTNVYYVNSTGASVTLDSSVCFINRYCEKLPRDKYSCAKPSFEFLPMEGCYQCKLILPPNAAFQTIIGPSEKDMRSAKHLVCFEACKKLHQMGALNEHLVPFSEDPLEADHITKNKESSSGAGTTKRKELHGTASIRALSGTWGDRFDGVKFHAYKFDFTCSIVNEMYSGFVLLIDSRLDDDVGNMELNLYLVSKIVKASVSSCGQVDLNAEQMMKAKCFHELFFNGLFGRLLVKSESARGKREFLLQKDTKSLWSPKNLYLLLPLEKLNDVCQGSLPINWSAINSSASAIEFLRRKFSLDAGNSDDSSTITSPNDSSSSEMECAGTNKIHFANCVADANNIKDTVVLAIHTGKIYCIIEMDSKLSAESPFDGNKEKSKESITFSNYFSQRYGITLRHPRQPLLRMKQSHNPHNLLFNFYEEADDRSSPSGPVTSKVPAHVHIPPELLCVLDVKSLVLKSLYLLPSLMYRIESFMLSSQLREEIDGQTSNFKIPCSLILEALTTLRCCEKFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSAKRSWAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQCSIHPVCCDCGLETLEVPLDVKFYTENPKVVVGKFCDRGHRYMCSKTIADCVEALIGAYYVGGGLFASLHVMKWLGIDAELELSLVDEAITAASLHAYVPKVSEIKGLEKKIGYEFSVKGLLLEAITHLSETELGIGCCYERLEFLGDSVLDLLITWHLYQSHRDVDPGVLTDLRSASVNNDNFAQVAVRQNLHHHLLHRSGFLLSQIAEYVKIISESDSRSLPGIKAPKALGDLVESIAGAILIDTKLNLDEVWKLFYPLLSPIVTPDKLELPPFRELNQLCDSLGYFVKVKEKCEKKGSVERIMLSVQLPNALLVQEGKGPNKKTAKGEAAFHLLKELEKRGISYCSSVSKGKRDNPDQIRDSSLLKMDSSISHSLTEEHSSNPALHKRPRLDDTNLSASEVSGFSASIPVISSINMKKGGPRTTLYELCKKLQWPMPAFDSTEHKRSILESCEGLEGSKGLNCFMSKITLCIPNDDDVECQGEARSDKKSSYDSAAVQMLYKLQQLGKLKIDAPN* 1650
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1349 1649 SMART helicmild6 411 498 IPR001650 -
Apr5g1349 1649 MobiDBLite consensus disorder prediction 849 868 - -
Apr5g1349 1649 SUPERFAMILY dsRNA-binding domain-like 1406 1478 - -
Apr5g1349 1649 Pfam Dicer dimerisation domain 566 650 - -
Apr5g1349 1649 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1434 1473 IPR014720 -
Apr5g1349 1649 CDD RIBOc 1252 1400 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 22 1642 - -
Apr5g1349 1649 Gene3D - 370 537 IPR027417 -
Apr5g1349 1649 ProSitePatterns Ribonuclease III family signature. 1272 1280 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 SMART ultradead3 33 232 IPR014001 -
Apr5g1349 1649 SUPERFAMILY PAZ domain 885 997 IPR036085 GO:0005515
Apr5g1349 1649 PANTHER DICER-RELATED 22 1642 - -
Apr5g1349 1649 Gene3D Dicer dimerisation domain 560 657 IPR038248 -
Apr5g1349 1649 SUPERFAMILY RNase III domain-like 1036 1214 IPR036389 GO:0004525|GO:0006396
Apr5g1349 1649 Gene3D Ribonuclease III domain 1024 1206 IPR036389 GO:0004525|GO:0006396
Apr5g1349 1649 Gene3D Ribonuclease III domain 1226 1399 IPR036389 GO:0004525|GO:0006396
Apr5g1349 1649 Gene3D - 1561 1639 - -
Apr5g1349 1649 ProSiteProfiles PAZ domain profile. 887 998 IPR003100 GO:0005515
Apr5g1349 1649 Gene3D paz domain 871 996 - -
Apr5g1349 1649 MobiDBLite consensus disorder prediction 1505 1524 - -
Apr5g1349 1649 Pfam Helicase conserved C-terminal domain 390 495 IPR001650 -
Apr5g1349 1649 SMART PAZ_2_a_3 865 1022 IPR003100 GO:0005515
Apr5g1349 1649 Gene3D - 32 266 IPR027417 -
Apr5g1349 1649 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 565 655 IPR005034 GO:0016891
Apr5g1349 1649 MobiDBLite consensus disorder prediction 1 16 - -
Apr5g1349 1649 ProSiteProfiles Ribonuclease III family domain profile. 1236 1379 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 SUPERFAMILY RNase III domain-like 1236 1399 IPR036389 GO:0004525|GO:0006396
Apr5g1349 1649 CDD SF2_C_dicer 374 506 - -
Apr5g1349 1649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 536 IPR001650 -
Apr5g1349 1649 Pfam Type III restriction enzyme, res subunit 42 201 IPR006935 GO:0003677|GO:0005524|GO:0016787
Apr5g1349 1649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 511 IPR027417 -
Apr5g1349 1649 Pfam PAZ domain 884 1018 IPR003100 GO:0005515
Apr5g1349 1649 ProSiteProfiles Ribonuclease III family domain profile. 1023 1195 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 MobiDBLite consensus disorder prediction 18 34 - -
Apr5g1349 1649 SMART riboneu5 1042 1215 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 SMART riboneu5 1251 1402 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 CDD DEXHc_dicer 37 232 - -
Apr5g1349 1649 Pfam Ribonuclease III domain 1272 1378 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 Pfam Ribonuclease III domain 1060 1194 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 CDD RIBOc 1042 1206 IPR000999 GO:0004525|GO:0006396
Apr5g1349 1649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 219 IPR014001 -
Apr5g1349 1649 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr5g1349 Apr-Chr5 17733344 17750307 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1349 422 495 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 1.58e-06 50.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1349 K11592 - gmx:100806831 2579.67