Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1348 ATGGGTGGTGATGGTAGAGTTGAAATTGTGAGTGGTAAGGGGTGCTCGAGGCTGTTTTCATCTTCGTTTCCTTCATTCAGAGGTATGCAACCGTTGGAGCCAATGTCTCCTGTTTCTTCCTCTGTACAAGTGCCTTCAAGTGCTCCTTTTGCAGGTCTTATTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACTGAGCGATTAGGAGGCCAGTATAGCCCCAATTTGCACCCTCAATGTACCCATTTGGTGGTTCAGATATCCTGTGGACGCAAATTTGATCATGCACTGAAGCACGGAGCAAAAATTGGTCTCTCTGTTGTCACACTGGGTTGGTTTGTGGACAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCGCATTATAGTGTGAAGAGTTATGGGGATAATAATATGCGCTTTGATGATTTGAAACTGCTTCCTGGGTATACAGATGCTGATAATTATTGTCTTCCTTTGAGAATCCATGAAACCAAGCATGCTAACAGTGTTGAAGAATTTCAAAGATTCTCTGGGAGAGAATCCAACCAAAGTTTGGACTCAACTTTGTCTGGTTGCTCCATCTACGTTGATCCAGGAATTTCATCTGAATTGAGGAACAAGGTTGTTGAGACTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATATAGTGACTGAAGGGACATCCATCCAAAGATATCTTGGATACTCTAGTAACCTTGTTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCAGAGGCTTGTTCACATGTCTGCTGATTTGGCAAGGCAAGTTAGCTTGACACTTGAAGACATTCATAATGGCATTTCAGGGAAGGGAAGTGAAAATGAGCTTAGTCACAAAGAAAGGCTACAGATTGTAAATTCTGCAAAAATTGGAGTAAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCGATACGTCCTATAACACCCAACAACCTTCTAGACTCAATCTGCTGGACAGTGTCCGAGCCATCTTCAACCGCTTCCATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAATCCTACGTCAATATTTTTTGACACCAAAGGGGATGGCAAGGAGTCAGAAGCTTCATTCTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGCTTATATTTAAAAACCATTTCCTCACCATACTCTTCCCAATAGACCGATTTGCCGAGATGGGTCCTTCATCGAGAACGTATTTTAGCCATAACGGTTTTACGTGTCTTCAAGTCTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGCCAGGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCAAGTAAGGAAACCGCAGAACGTGGCTTTGTGATATTCAAAAGGGTTGAATTCTTGGGTAGTCGTACGAGTTTTGAAATGTTGAAGCGTGTAAATGGTGACAACTCCTCCAATGTGTATGAGCTATTACTTAGGGCGTAA 1581 0.425 MGGDGRVEIVSGKGCSRLFSSSFPSFRGMQPLEPMSPVSSSVQVPSSAPFAGLIICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISCGRKFDHALKHGAKIGLSVVTLGWFVDSVRKNVRLSESHYSVKSYGDNNMRFDDLKLLPGYTDADNYCLPLRIHETKHANSVEEFQRFSGRESNQSLDSTLSGCSIYVDPGISSELRNKVVETASREGASLVEQWFVGCNVSHIVTEGTSIQRYLGYSSNLVTPLWILKTAKEKYVQRLVHMSADLARQVSLTLEDIHNGISGKGSENELSHKERLQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWTVSEPSSTASIYTDSFSVEDPSENPTSIFFDTKGDGKESEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTYFSHNGFTCLQVLDHIHAFYQENMSSQEIEAAIHSDSRHADRLRSVYSSKETAERGFVIFKRVEFLGSRTSFEMLKRVNGDNSSNVYELLLRA* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1348 526 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Apr5g1348 526 SMART BRCT_7 193 269 IPR001357 -
Apr5g1348 526 SMART BRCT_7 47 127 IPR001357 -
Apr5g1348 526 ProSiteProfiles BRCT domain profile. 191 269 IPR001357 -
Apr5g1348 526 Gene3D BRCT domain 48 139 IPR036420 -
Apr5g1348 526 SUPERFAMILY BRCT domain 193 271 IPR036420 -
Apr5g1348 526 Pfam Family of unknown function (DUF6699) 349 510 IPR046522 -
Apr5g1348 526 Pfam twin BRCT domain 53 119 IPR001357 -
Apr5g1348 526 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Apr5g1348 526 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 526 - -
Apr5g1348 526 SUPERFAMILY BRCT domain 43 138 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1348 49 137 Core DNA Replication Machinery Family AT1G77320 38.202 6.15e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1348 - - gmx:100815253 887.1