Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1347 ATGGCTGATGTCATGGTCATGAAAGAGATCGAAGACACCGCGTTGCGTCTCGGCATCGATCTTTCCACTCTCGACCTCGACGCCATTCGTCTTCCCCCAGGCGAAAATTGCGGCATCATCAGCGATGATGAGGATATTTATGAAGAGGATAACCTCGAGTTTGAGTCTGGATTCGGCAACATCATAGTCGTGGATAATCTCCCTGTTGTTCCGAGGGAGAAGTTTGAGAAGCTTGAAGGCGTGGTTCGCAAAATTTATAGTCAGATTGGTGTTATCAAAGACGATGGTCTCTGGATGCCTGTTGATACTGAAACTGATAAGACCTTAGGTTACTGCTTCATCGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCGCACATATTTTCCGTGAGCATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCAGATGAGTGGGCTCCTCCTGAATCTAAGCCATATGTGGCTGGGGAAAATCTTCAACACTGGCTCACAGATTCAAAGGCCAGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAAGTGTTGTGGAATGATGCAAGACACTTAAAGCCTGATCCTGTTTATAAGCGTGCATTTTGGACAGAGAGTTTTGTGCAATGGTCCCCTCTGGGGACATACTTGGCAACGGTTCACAGGCAGGGGGCAGCTGTCTGGGGTGGTGCTACGACCTTCAACCGTCTCATGCGTTATGCTCATCCTCAGGTGAAACTTATTGATTTTTCACCTGGTGAGAAGTATCTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTAGAGATGCCAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTTATGAGGGATTTTAAAGGAAGTGCTGATGACTTTGCAATTGGAGGTGCTGGTGGTGTTACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTGGCGGAAAGGATGATAAATATTTCGCAAGGATGGGGAAAAATATACTCTCTGTGTATGAGACAGAGAGCTTTTCTCTTGTTGACAAAAAGTCCTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTGGTTCAAATCCCTAACAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTAGACCGATATACTAAAACTAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGCGATATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCTAAAGGCCACAGGTTTGTTGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTTCTCCATGCGGACTGCTCAGAACACTGGCCGGGTTTCAAAACTCGCTACTTTGAAAGGCAAGCAGGCAAATGCTCTGTTCTGGTCACCTGCTGGTCGCTACATTGTACTGGCTGGATTGAAAGGCTTCAATGGACAGTTGGAATTTTATAATGTCGATGAACTTGAAACAATGGCTACTGCTGAACATTTTATGGCCACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTTCCGTAACCTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTAATGGCAAGCATCTGTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGGCCTCCATCTTTCTTGACTCTCGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTATAGCAAGAAATATGAGGCAGAAGATCAAGATGTTTCATTGCTGCTGAGTGAGCAAGAGCGTGAGAAGCGTAGGATGCTGAAAGAAGAGTGGGACAAGTGGGTCAATGAATGGAAGCGGATGCACGAAGAGGAGGGTTTACATAGGCAAAAGCTTAGGGACGGAGAGGCTAGTGACGAAGAAGAGGAATACGAAGCAAAGGACATAGAAGTTGAAGAAGTGATCGATGTATCAGAAGAGGTTCTTCACTTTGAGTATGGTCAAGAGTGA 2160 0.4407 MADVMVMKEIEDTALRLGIDLSTLDLDAIRLPPGENCGIISDDEDIYEEDNLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKDDGLWMPVDTETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPDEWAPPESKPYVAGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVTGVSWPVFKWSGGKDDKYFARMGKNILSVYETESFSLVDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLVQIPNKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIFSMRTAQNTGRVSKLATLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTLEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRMHEEEGLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1347 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr5g1347 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Apr5g1347 719 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Apr5g1347 719 MobiDBLite consensus disorder prediction 675 696 - -
Apr5g1347 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Apr5g1347 719 Gene3D - 59 143 IPR012677 -
Apr5g1347 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Apr5g1347 719 SUPERFAMILY RNA-binding domain, RBD 51 139 IPR035979 GO:0003676
Apr5g1347 719 Coils Coil 618 638 - -
Apr5g1347 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr5g1347 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Apr5g1347 719 Gene3D - 178 384 IPR015943 GO:0005515
Apr5g1347 719 Gene3D - 392 631 IPR015943 GO:0005515
Apr5g1347 719 CDD RRM_eIF3B 59 142 IPR034363 -
Apr5g1347 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr5g1347 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1347 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.042 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1347 K03253 - gmx:100817394 1380.93