Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1344 ATGGACATGGAGAAGCATGCCATGGCTAGTGCTGGTGCTAGTGGTTATAGTAGTGATGCTAATCCTAATCAGACCCCATATGCATCTTCTTCTGTTAATGATAATAACAAGTTATACAAAGGAGTGAGAAAGAGAAAGTGGGGAAAATGGGTTTCTGAAATAAGGCTTCCCAATAGCCGTGAACGCATATGGCTAGGGTCTTATGATTCCCCCGAGAAAGCTGCACGAGCCTTCGATGCTGCCCTTTATTGTCTACGTGGTCGCCATGCCAATTTCAATTTCCCTGACACACCTTGCAACTTGGAGATCAATAATGTGGCTCTTATACCTGGTCACCAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCAAAGTTTGCAAACGAGGATCCACTACAACTACTACCTCTTGATCAAGAACCTCAACGTGATGGTAATGGTAATGGTAATGGTAATTCATCACTGGGATCAAAATTATTATCTAAATCGGATAGCACAGTTGAGAGTAGTAGCACTTGTACCCCCACCACCACAGCCTCGTCATGTTCTACTACTACGTTTGAATGTGATGGGACGGTGCAAGTGGACCATGGGGACATGAGCATAATGGATTGGACATTCTTGAACGTGTTTGATTATTCCAATGAGGTTGTTCCTGTTGCCTCAGACTATGCTCTCTATTCTGAGTTAGACAATATGCACTCAGGTGAGTTATTGTATTCCACTCCTCCACCACCACATCCTTTTCAGGATAACGATATTGAAGATTATGATCCCTTTTATCAACAATCATCCCTTTGGAATTGGAACTTTTGA 819 0.4286 MDMEKHAMASAGASGYSSDANPNQTPYASSSVNDNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPDTPCNLEINNVALIPGHQSLTPQEIQEVAAKFANEDPLQLLPLDQEPQRDGNGNGNGNSSLGSKLLSKSDSTVESSSTCTPTTTASSCSTTTFECDGTVQVDHGDMSIMDWTFLNVFDYSNEVVPVASDYALYSELDNMHSGELLYSTPPPPHPFQDNDIEDYDPFYQQSSLWNWNF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1344 272 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Apr5g1344 272 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Apr5g1344 272 MobiDBLite consensus disorder prediction 14 34 - -
Apr5g1344 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 29 272 - -
Apr5g1344 272 MobiDBLite consensus disorder prediction 9 34 - -
Apr5g1344 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 272 - -
Apr5g1344 272 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 MobiDBLite consensus disorder prediction 138 184 - -
Apr5g1344 272 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Apr5g1344 272 MobiDBLite consensus disorder prediction 144 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1344 Apr-Chr5 17694181 17695433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1344 39 129 AP2-EREBP Transcription Factor Family AT1G19210 72.527 5.23e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr5g1344 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1344 - - gmx:100808434 299.671